Variant report

Variant	rs387906871
Chromosome Location	chr11:65770755-65770756
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:13)
CpG islands
(count:0)
Chromatin interactive
region (count:20)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:13 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr11:65770702-65770918	GM12891	blood:	n/a	n/a
2	POLR2A	chr11:65768720-65770765	K562	blood:	n/a	n/a
3	POLR2A	chr11:65768961-65771436	PANC-1	pancreas:	n/a	n/a
4	POLR2A	chr11:65768990-65772628	GM12878	blood:	n/a	n/a
5	MXI1	chr11:65768500-65771007	SK-N-SH	brain:	n/a	chr11:65769021-65769036
6	HCFC1	chr11:65768883-65771260	Hela-S3	cervix:	n/a	n/a
7	SREBP1	chr11:65768865-65770759	GM12878	blood:	n/a	chr11:65769022-65769036
8	POLR2A	chr11:65769184-65770807	Hela-S3	cervix:	n/a	n/a
9	POLR2A	chr11:65769240-65770760	PANC-1	pancreas:	n/a	n/a
10	POLR2A	chr11:65770172-65770856	GM12878	blood:	n/a	n/a
11	POLR2A	chr11:65769061-65771530	HepG2	liver:	n/a	n/a
12	JUN	chr11:65768928-65770810	K562	blood:	n/a	chr11:65770266-65770275
13	SIN3AK20	chr11:65768973-65770875	MCF-7	breast:	n/a	n/a

No data

(count:20 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr11:65745204..65747160-chr11:65768458..65770932,2	MCF-7	breast:
2	chr11:65769812..65778104-chr11:65786537..65794453,15	K562	blood:
3	chr11:65727706..65730705-chr11:65767958..65771448,5	K562	blood:
4	chr11:65768250..65771590-chr11:65817294..65821421,6	K562	blood:
5	chr11:65768250..65771110-chr11:65819143..65821313,2	K562	blood:
6	chr11:65768121..65772581-chr11:65835630..65838620,4	MCF-7	breast:
7	chr11:65728631..65731213-chr11:65769693..65771448,3	K562	blood:
8	chr11:65767772..65771693-chr11:65812597..65815090,3	MCF-7	breast:
9	chr11:65626233..65629168-chr11:65768411..65771473,3	MCF-7	breast:
10	chr11:65767679..65771369-chr11:65818165..65822112,6	MCF-7	breast:
11	chr11:65768713..65771187-chr11:65815106..65817250,2	MCF-7	breast:
12	chr11:65652640..65657924-chr11:65769844..65772901,4	MCF-7	breast:
13	chr11:65727817..65730505-chr11:65769706..65771571,3	MCF-7	breast:
14	chr11:65727757..65730728-chr11:65768462..65771270,6	MCF-7	breast:
15	chr11:65380602..65383246-chr11:65768678..65771455,2	K562	blood:
16	chr11:65769145..65771135-chr11:65826724..65830064,3	MCF-7	breast:
17	chr11:65631727..65633927-chr11:65768782..65771616,2	MCF-7	breast:
18	chr11:65635925..65638559-chr11:65769134..65770863,2	MCF-7	breast:
19	chr11:65428607..65430796-chr11:65768393..65771088,2	K562	blood:
20	chr11:65623413..65628719-chr11:65768360..65773657,11	MCF-7	breast:

No data

Variant related genes	Relation type
EIF1AD	TF binding region
ENSG00000172638	Chromatin interaction
ENSG00000172500	Chromatin interaction
ENSG00000175229	Chromatin interaction
ENSG00000175115	Chromatin interaction
ENSG00000175294	Chromatin interaction
ENSG00000173039	Chromatin interaction
ENSG00000172732	Chromatin interaction
ENSG00000172757	Chromatin interaction
ENSG00000087365	Chromatin interaction
ENSG00000238752	Chromatin interaction
ENSG00000197136	Chromatin interaction
ENSG00000255038	Chromatin interaction
ENSG00000173327	Chromatin interaction
ENSG00000175467	Chromatin interaction
ENSG00000175602	Chromatin interaction

Extended variants
information (count: 7 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv430401	chr11:65419324-65788024	Enhancers Weak transcription Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	224 gene(s)	inside rSNPs	diseases
2	nsv832191	chr11:65632329-65806120	Flanking Active TSS Weak transcription Active TSS Strong transcription Enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	119 gene(s)	inside rSNPs	diseases
3	nsv948711	chr11:65692760-65949674	Genic enhancers Weak transcription Enhancers Transcr. at gene 5' and 3' Strong transcription Active TSS Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	65 gene(s)	inside rSNPs	diseases
4	nsv897768	chr11:65715210-65842064	Enhancers Flanking Active TSS Weak transcription Active TSS Genic enhancers Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	61 gene(s)	inside rSNPs	diseases
5	nsv897769	chr11:65727799-65828625	Weak transcription Strong transcription Genic enhancers Enhancers Bivalent Enhancer Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	56 gene(s)	inside rSNPs	diseases
6	esv3335923	chr11:65741698-66175759	Active TSS Weak transcription Strong transcription Transcr. at gene 5' and 3' Enhancers Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	117 gene(s)	inside rSNPs	diseases
7	esv3347668	chr11:65770742-65771367	Genic enhancers Weak transcription Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Strong transcription Active TSS	TF binding region CpG island Chromatin interactive region	16 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:65768000-65770800	Active TSS	ES-I3 Cell Line	embryonic stem cell
2	chr11:65768000-65770800	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
3	chr11:65768000-65770800	Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
4	chr11:65768000-65771200	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr11:65768200-65770800	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
6	chr11:65768400-65771000	Active TSS	H1 Cell Line	embryonic stem cell
7	chr11:65768400-65771000	Active TSS	H9 Cell Line	embryonic stem cell
8	chr11:65768400-65771200	Active TSS	HUES64 Cell Line	embryonic stem cell
9	chr11:65768400-65771200	Active TSS	iPS-20b Cell Line	embryonic stem cell
10	chr11:65768600-65770800	Active TSS	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr11:65768600-65770800	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
12	chr11:65768600-65770800	Active TSS	Pancreatic Islets	Pancreatic Islet
13	chr11:65768600-65770800	Active TSS	Ovary	ovary
14	chr11:65768600-65771000	Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
15	chr11:65768600-65771000	Active TSS	HUES48 Cell Line	embryonic stem cell
16	chr11:65768600-65771000	Active TSS	HUES6 Cell Line	embryonic stem cell
17	chr11:65768600-65771000	Active TSS	iPS-18 Cell Line	embryonic stem cell
18	chr11:65768600-65771000	Active TSS	A549	lung
19	chr11:65768600-65771200	Active TSS	iPS-15b Cell Line	embryonic stem cell
20	chr11:65768600-65771200	Active TSS	NHDF-Ad	bronchial
21	chr11:65768800-65770800	Active TSS	Aorta	Aorta
22	chr11:65768800-65770800	Active TSS	Esophagus	oesophagus
23	chr11:65768800-65770800	Active TSS	Psoas Muscle	Psoas
24	chr11:65768800-65771000	Active TSS	Fetal Kidney	kidney
25	chr11:65769000-65770800	Flanking Active TSS	Primary mononuclear cells fromperipheralblood	Blood
26	chr11:65769000-65770800	Active TSS	Gastric	stomach
27	chr11:65769000-65770800	Active TSS	Pancreas	Pancrea
28	chr11:65769000-65770800	Active TSS	Sigmoid Colon	Sigmoid Colon
29	chr11:65769600-65770800	Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
30	chr11:65770200-65770800	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
31	chr11:65770200-65771000	Transcr. at gene 5' and 3'	iPS DF 19.11 Cell Line	embryonic stem cell
32	chr11:65770400-65770800	Flanking Active TSS	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
33	chr11:65770400-65770800	Flanking Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
34	chr11:65770400-65770800	Flanking Active TSS	Primary monocytes fromperipheralblood	blood
35	chr11:65770400-65770800	Flanking Active TSS	Primary B cells from cord blood	blood
36	chr11:65770400-65770800	Flanking Active TSS	Primary B cells from peripheral blood	blood
37	chr11:65770400-65770800	Flanking Active TSS	Primary T cells from cord blood	blood
38	chr11:65770400-65770800	Flanking Active TSS	Primary T cells fromperipheralblood	blood
39	chr11:65770400-65770800	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
40	chr11:65770400-65770800	Flanking Active TSS	Primary T helper naive cells fromperipheralblood	blood
41	chr11:65770400-65770800	Flanking Active TSS	Primary Natural Killer cells fromperipheralblood	blood
42	chr11:65770400-65770800	Flanking Active TSS	Primary T killer naive cells fromperipheralblood	blood
43	chr11:65770400-65770800	Flanking Active TSS	Primary T killer memory cells from peripheral blood	blood
44	chr11:65770400-65770800	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
45	chr11:65770400-65770800	Flanking Active TSS	Fetal Lung	lung
46	chr11:65770400-65770800	Flanking Active TSS	Placenta	Placenta
47	chr11:65770400-65770800	Active TSS	Right Atrium	heart
48	chr11:65770400-65770800	Flanking Active TSS	Stomach Smooth Muscle	stomach
49	chr11:65770400-65770800	Flanking Active TSS	Thymus	Thymus
50	chr11:65770400-65771000	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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