Variant report

Variant	rs3886248
Chromosome Location	chr8:52926773-52926774
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10088713	0.81[CHD][hapmap];0.87[GIH][hapmap];0.91[JPT][hapmap]
rs10104090	0.85[CHD][hapmap];0.96[GIH][hapmap];0.91[JPT][hapmap];0.88[MEX][hapmap];0.81[ASN][1000 genomes]
rs16917071	0.84[AMR][1000 genomes]
rs16917075	0.84[AMR][1000 genomes]
rs2280179	0.87[YRI][hapmap]
rs4873633	0.84[AFR][1000 genomes];0.86[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs57332463	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61159260	0.81[AFR][1000 genomes];0.86[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs6473676	0.81[YRI][hapmap]
rs6473678	0.85[YRI][hapmap]
rs6988634	0.91[JPT][hapmap];0.81[ASN][1000 genomes]
rs7010217	0.81[CHD][hapmap];0.90[TSI][hapmap]
rs7012362	0.96[ASN][1000 genomes]
rs73593041	0.82[AFR][1000 genomes];0.94[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73593042	0.81[ASN][1000 genomes]
rs73679114	0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv817615	chr8:52252405-53023384	Strong transcription Enhancers Flanking Active TSS Weak transcription Genic enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
2	nsv890899	chr8:52924095-52964522	Enhancers Weak transcription Flanking Active TSS Active TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:52921200-52932800	Weak transcription	Pancreas	Pancrea
2	chr8:52926400-52927000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr8:52926600-52927000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr8:52926600-52927000	Enhancers	HUES48 Cell Line	embryonic stem cell
5	chr8:52926600-52927000	Enhancers	Pancreatic Islets	Pancreatic Islet

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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