Variant report

Variant	rs3886841
Chromosome Location	chr8:118594438-118594439
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs1115177	1.00[ASN][1000 genomes]
rs1480167	0.83[EUR][1000 genomes]
rs1480168	1.00[ASN][1000 genomes]
rs6994539	1.00[ASN][1000 genomes]
rs7003883	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72672150	1.00[ASN][1000 genomes]
rs72672160	1.00[ASN][1000 genomes]
rs72672165	1.00[ASN][1000 genomes]
rs72672166	1.00[ASN][1000 genomes]
rs72672167	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72672168	0.84[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72672169	1.00[ASN][1000 genomes]
rs922588	1.00[ASN][1000 genomes]

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs3886841	MTBP	cis	parietal	SCAN
rs3886841	MAL2	cis	cerebellum	SCAN

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:118591600-118615000	Weak transcription	Aorta	Aorta
2	chr8:118594000-118594800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr8:118594200-118595000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
4	chr8:118594200-118595000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
5	chr8:118594400-118594800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr8:118594400-118594800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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