Variant report

Variant	rs3889226
Chromosome Location	chr6:34457528-34457529
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:34440695..34443428-chr6:34457495..34459339,2	MCF-7	breast:
2	chr6:34450820..34454475-chr6:34457385..34459321,3	K562	blood:

Variant related genes	Relation type
ENSG00000124507	Chromatin interaction

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs10947505	0.87[ASN][1000 genomes]
rs7748484	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1022844	chr6:34317219-35060519	Weak transcription Genic enhancers Enhancers Active TSS Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	67 gene(s)	inside rSNPs	diseases
2	nsv538195	chr6:34317219-35060519	Enhancers Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Weak transcription Genic enhancers Active TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	67 gene(s)	inside rSNPs	diseases
3	esv2758046	chr6:34382492-34714677	Genic enhancers Enhancers Active TSS Strong transcription Weak transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
4	esv2759418	chr6:34382492-34714677	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
5	nsv885785	chr6:34404636-34874002	Weak transcription Active TSS Strong transcription Enhancers Flanking Active TSS Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	49 gene(s)	inside rSNPs	diseases
6	nsv462904	chr6:34416388-34493012	Flanking Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	10 gene(s)	inside rSNPs	diseases
7	nsv602903	chr6:34416388-34493012	Bivalent Enhancer Enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	10 gene(s)	inside rSNPs	diseases
8	nsv885786	chr6:34426884-34542662	Bivalent Enhancer Flanking Active TSS Enhancers Active TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	16 gene(s)	inside rSNPs	diseases
9	esv1813536	chr6:34455242-34545123	Weak transcription Bivalent Enhancer Enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:34441400-34494000	Weak transcription	Right Atrium	heart
2	chr6:34444600-34468200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
3	chr6:34451000-34458800	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
4	chr6:34453200-34458400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
5	chr6:34453200-34458400	Weak transcription	HUES6 Cell Line	embryonic stem cell
6	chr6:34453400-34458200	Weak transcription	K562	blood
7	chr6:34454400-34458200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
8	chr6:34454400-34458400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
9	chr6:34454400-34459000	Weak transcription	NHEK	skin
10	chr6:34454400-34461000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
11	chr6:34454400-34464800	Weak transcription	Thymus	Thymus
12	chr6:34455000-34458400	Weak transcription	Fetal Thymus	thymus
13	chr6:34455200-34459800	Enhancers	Primary hematopoietic stem cells short term culture	blood
14	chr6:34456000-34458800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
15	chr6:34456200-34458400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
16	chr6:34456200-34459200	Weak transcription	Right Ventricle	heart
17	chr6:34456400-34458200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
18	chr6:34456400-34458800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
19	chr6:34456600-34458400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
20	chr6:34456600-34458400	Weak transcription	Primary hematopoietic stem cells	blood
21	chr6:34457400-34458600	Weak transcription	H1 Cell Line	embryonic stem cell

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