Variant report

Variant	rs3889505
Chromosome Location	chr11:120403166-120403167
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:120400831..120403773-chr11:120408317..120411578,3	K562	blood:
2	chr11:120400831..120403773-chr11:120408682..120411578,3	K562	blood:

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs11606019	1.00[AMR][1000 genomes]
rs4312073	1.00[AMR][1000 genomes]
rs7479137	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1054057	chr11:119781953-120519770	Enhancers Strong transcription Weak transcription Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
2	nsv541178	chr11:119781953-120519770	Weak transcription Enhancers Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
3	nsv1051115	chr11:120376808-120446434	Enhancers Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
4	nsv1036388	chr11:120395104-120427135	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv1054301	chr11:120396485-120465800	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	nsv1053749	chr11:120398643-120417586	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
7	nsv1035499	chr11:120398643-120446434	Enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
8	nsv1049494	chr11:120400115-120453381	Enhancers Flanking Active TSS Active TSS Weak transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:43 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:120388800-120403400	Weak transcription	Right Atrium	heart
2	chr11:120398600-120403200	Weak transcription	HUES48 Cell Line	embryonic stem cell
3	chr11:120398600-120403200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
4	chr11:120398600-120403400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr11:120398600-120403400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
6	chr11:120398600-120417200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
7	chr11:120398800-120408800	Weak transcription	H1 Cell Line	embryonic stem cell
8	chr11:120400000-120404200	Enhancers	Fetal Intestine Large	intestine
9	chr11:120400000-120404400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
10	chr11:120402000-120403200	Enhancers	Ovary	ovary
11	chr11:120402600-120403200	Enhancers	Cortex derived primary cultured neurospheres	brain
12	chr11:120402600-120404000	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
13	chr11:120402600-120404400	Enhancers	Fetal Intestine Small	intestine
14	chr11:120402800-120403200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
15	chr11:120402800-120403200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
16	chr11:120402800-120403200	Bivalent Enhancer	Fetal Muscle Trunk	muscle
17	chr11:120402800-120403600	Flanking Active TSS	NHDF-Ad	bronchial
18	chr11:120402800-120403800	Bivalent Enhancer	H1 Derived Mesenchymal Stem Cells	ES cell derived
19	chr11:120402800-120403800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
20	chr11:120402800-120403800	Enhancers	Brain Cingulate Gyrus	brain
21	chr11:120402800-120403800	Enhancers	Brain Hippocampus Middle	brain
22	chr11:120402800-120403800	Enhancers	Fetal Muscle Leg	muscle
23	chr11:120402800-120403800	Enhancers	Placenta	Placenta
24	chr11:120402800-120404000	Flanking Active TSS	HepG2	liver
25	chr11:120402800-120404200	Enhancers	Breast Myoepithelial Primary Cells	Breast
26	chr11:120403000-120403200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
27	chr11:120403000-120403200	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
28	chr11:120403000-120403200	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
29	chr11:120403000-120403200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
30	chr11:120403000-120403200	Flanking Bivalent TSS/Enh	Foreskin Fibroblast Primary Cells skin01	Skin
31	chr11:120403000-120403200	Enhancers	Fetal Lung	lung
32	chr11:120403000-120403200	Bivalent Enhancer	Fetal Stomach	stomach
33	chr11:120403000-120403200	Flanking Active TSS	HSMMtube	muscle
34	chr11:120403000-120403400	Bivalent Enhancer	Foreskin Fibroblast Primary Cells skin02	Skin
35	chr11:120403000-120403600	Enhancers	Fetal Brain Female	brain
36	chr11:120403000-120403800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
37	chr11:120403000-120403800	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
38	chr11:120403000-120403800	Enhancers	Brain Inferior Temporal Lobe	brain
39	chr11:120403000-120403800	Bivalent Enhancer	Stomach Smooth Muscle	stomach
40	chr11:120403000-120403800	Enhancers	NH-A	brain
41	chr11:120403000-120403800	Flanking Active TSS	Osteobl	bone
42	chr11:120403000-120404000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
43	chr11:120403000-120404000	Enhancers	HUES64 Cell Line	embryonic stem cell

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