Variant report

Variant	rs3891155
Chromosome Location	chr6:30910085-30910086
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:30909379..30912231-chr6:30914675..30916969,2	MCF-7	breast:
2	chr6:30800606..30802983-chr6:30909821..30912255,2	K562	blood:
3	chr6:30889584..30892260-chr6:30907683..30910382,2	MCF-7	breast:
4	chr6:30908915..30911077-chr6:30950110..30952624,2	MCF-7	breast:
5	chr6:30883403..30884976-chr6:30908264..30911485,3	MCF-7	breast:
6	chr6:30850763..30853588-chr6:30910036..30912491,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000204580	Chromatin interaction
ENSG00000137411	Chromatin interaction
ENSG00000204544	Chromatin interaction

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs11970154	0.93[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2253705	0.89[AFR][1000 genomes]
rs2517459	0.87[AFR][1000 genomes]
rs2532932	0.89[AFR][1000 genomes]
rs3130779	0.86[AFR][1000 genomes]
rs3130788	0.81[AFR][1000 genomes]
rs3131032	0.86[AFR][1000 genomes]
rs3131034	0.85[AFR][1000 genomes]
rs56366011	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs58893284	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59417026	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6933400	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6933909	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs73432206	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3519970	chr6:30382942-31378788	Genic enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Enhancers Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	1030 gene(s)	inside rSNPs	diseases
2	esv3519971	chr6:30382942-31378788	Bivalent Enhancer Flanking Active TSS Active TSS Weak transcription Enhancers Transcr. at gene 5' and 3' Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	1030 gene(s)	inside rSNPs	diseases
3	nsv601481	chr6:30422632-31284253	Weak transcription Genic enhancers Transcr. at gene 5' and 3' Flanking Active TSS Strong transcription Enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	1012 gene(s)	inside rSNPs	diseases
4	nsv1015372	chr6:30704734-31582152	Active TSS Flanking Active TSS Enhancers Weak transcription Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	334 gene(s)	inside rSNPs	diseases
5	nsv538173	chr6:30704734-31582152	Flanking Active TSS Enhancers Weak transcription Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	334 gene(s)	inside rSNPs	diseases
6	nsv1031677	chr6:30857542-30972865	Flanking Active TSS Weak transcription Bivalent Enhancer Genic enhancers Enhancers Active TSS Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
7	nsv525438	chr6:30864829-30933975	Weak transcription Strong transcription Enhancers Transcr. at gene 5' and 3' Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
8	nsv462743	chr6:30905313-30957766	Weak transcription Flanking Active TSS Bivalent Enhancer Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
9	nsv601483	chr6:30905313-30957766	Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:45 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:30904200-30910200	Weak transcription	Placenta Amnion	Placenta Amnion
2	chr6:30905200-30910200	Weak transcription	Right Ventricle	heart
3	chr6:30906600-30910200	Weak transcription	Lung	lung
4	chr6:30908600-30910200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
5	chr6:30908600-30910200	Active TSS	Gastric	stomach
6	chr6:30908800-30910200	Weak transcription	Fetal Intestine Large	intestine
7	chr6:30908800-30910200	Weak transcription	Fetal Intestine Small	intestine
8	chr6:30909000-30910200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
9	chr6:30909400-30910800	Enhancers	ES-I3 Cell Line	embryonic stem cell
10	chr6:30909400-30911000	Enhancers	Fetal Heart	heart
11	chr6:30909400-30911000	Enhancers	Pancreas	Pancrea
12	chr6:30909600-30910200	Enhancers	HUES6 Cell Line	embryonic stem cell
13	chr6:30909600-30910200	Enhancers	iPS-18 Cell Line	embryonic stem cell
14	chr6:30909600-30910200	Enhancers	A549	lung
15	chr6:30909600-30910400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
16	chr6:30909600-30910400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
17	chr6:30909600-30911000	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
18	chr6:30909600-30911200	Enhancers	H1 Cell Line	embryonic stem cell
19	chr6:30909600-30911200	Transcr. at gene 5' and 3'	Stomach Mucosa	stomach
20	chr6:30909800-30910200	Bivalent Enhancer	Foreskin Fibroblast Primary Cells skin02	Skin
21	chr6:30909800-30910200	Bivalent Enhancer	Stomach Smooth Muscle	stomach
22	chr6:30909800-30910200	Enhancers	Hela-S3	cervix
23	chr6:30909800-30910400	Enhancers	iPS-15b Cell Line	embryonic stem cell
24	chr6:30909800-30911000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
25	chr6:30909800-30911000	Enhancers	H9 Cell Line	embryonic stem cell
26	chr6:30909800-30911000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
27	chr6:30909800-30911000	Enhancers	HUES48 Cell Line	embryonic stem cell
28	chr6:30909800-30911000	Enhancers	HUES64 Cell Line	embryonic stem cell
29	chr6:30909800-30911200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
30	chr6:30909800-30911400	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
31	chr6:30910000-30910200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
32	chr6:30910000-30910400	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
33	chr6:30910000-30910400	Flanking Active TSS	iPS-20b Cell Line	embryonic stem cell
34	chr6:30910000-30910400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
35	chr6:30910000-30910600	Enhancers	HSMMtube	muscle
36	chr6:30910000-30910800	Enhancers	Esophagus	oesophagus
37	chr6:30910000-30910800	Enhancers	NHEK	skin
38	chr6:30910000-30911000	Enhancers	ES-WA7 Cell Line	embryonic stem cell
39	chr6:30910000-30911000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
40	chr6:30910000-30911000	Enhancers	Left Ventricle	heart
41	chr6:30910000-30911000	Enhancers	Right Atrium	heart
42	chr6:30910000-30911000	Enhancers	HMEC	breast
43	chr6:30910000-30911000	Enhancers	HSMM	muscle
44	chr6:30910000-30911200	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
45	chr6:30910000-30911200	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell

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