Variant report

Variant	rs3892113
Chromosome Location	chr18:11876613-11876614
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs3865368	1.00[LWK][hapmap]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3362008	chr18:11647654-11959830	Active TSS Weak transcription Strong transcription Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
2	nsv833590	chr18:11757329-11924539	Active TSS Weak transcription Enhancers Flanking Active TSS Genic enhancers Strong transcription Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
3	nsv1055453	chr18:11776790-12110135	Weak transcription Active TSS Enhancers Genic enhancers Strong transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	66 gene(s)	inside rSNPs	diseases
4	nsv543654	chr18:11776790-12110135	Active TSS Weak transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	66 gene(s)	inside rSNPs	diseases
5	nsv909382	chr18:11870015-11892860	Weak transcription Genic enhancers Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region miRNA target site	5 gene(s)	inside rSNPs	diseases
6	nsv525904	chr18:11873934-11879825	Strong transcription Weak transcription ZNF genes & repeats Enhancers Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:78 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:11852400-11880800	Weak transcription	Aorta	Aorta
2	chr18:11853600-11883800	Weak transcription	Ovary	ovary
3	chr18:11853800-11884200	Weak transcription	Brain Substantia Nigra	brain
4	chr18:11854000-11884200	Weak transcription	Brain Angular Gyrus	brain
5	chr18:11854800-11889200	Weak transcription	Fetal Brain Male	brain
6	chr18:11855600-11880800	Weak transcription	Fetal Brain Female	brain
7	chr18:11858200-11884000	Weak transcription	Colon Smooth Muscle	Colon
8	chr18:11858600-11879400	Weak transcription	Adipose Nuclei	Adipose
9	chr18:11859000-11886400	Weak transcription	H1 Cell Line	embryonic stem cell
10	chr18:11861000-11880800	Weak transcription	Esophagus	oesophagus
11	chr18:11861800-11887800	Weak transcription	Psoas Muscle	Psoas
12	chr18:11862400-11879200	Weak transcription	Spleen	Spleen
13	chr18:11867200-11884000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
14	chr18:11867200-11884400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
15	chr18:11867400-11880800	Weak transcription	Duodenum Mucosa	Duodenum
16	chr18:11868800-11877600	Weak transcription	HUES48 Cell Line	embryonic stem cell
17	chr18:11869000-11877800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
18	chr18:11869000-11877800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
19	chr18:11871600-11884000	Weak transcription	Colonic Mucosa	Colon
20	chr18:11871600-11884200	Weak transcription	Cortex derived primary cultured neurospheres	brain
21	chr18:11871800-11884400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
22	chr18:11871800-11885000	Weak transcription	NHEK	skin
23	chr18:11872400-11884400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
24	chr18:11872400-11884400	Weak transcription	Hela-S3	cervix
25	chr18:11872800-11880800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
26	chr18:11873000-11880800	Weak transcription	Gastric	stomach
27	chr18:11873000-11880800	Weak transcription	Right Ventricle	heart
28	chr18:11873000-11882200	Strong transcription	Skeletal Muscle Female	skeletal muscle
29	chr18:11873000-11884000	Weak transcription	Fetal Muscle Trunk	muscle
30	chr18:11873000-11884000	Weak transcription	Fetal Muscle Leg	muscle
31	chr18:11873000-11884400	Weak transcription	HSMM	muscle
32	chr18:11873000-11887400	Weak transcription	A549	lung
33	chr18:11873200-11880800	Weak transcription	Pancreas	Pancrea
34	chr18:11873200-11883800	Weak transcription	Liver	Liver
35	chr18:11873200-11883800	Weak transcription	Left Ventricle	heart
36	chr18:11873200-11902000	Weak transcription	Fetal Heart	heart
37	chr18:11873400-11879800	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
38	chr18:11873400-11882200	Strong transcription	Skeletal Muscle Male	skeletal muscle
39	chr18:11873400-11884200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
40	chr18:11873600-11878000	Weak transcription	Primary T cells from cord blood	blood
41	chr18:11873800-11880800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
42	chr18:11874200-11884000	Weak transcription	Fetal Intestine Large	intestine
43	chr18:11874600-11877200	Weak transcription	Primary neutrophils fromperipheralblood	blood
44	chr18:11874800-11880600	Weak transcription	Rectal Smooth Muscle	rectum
45	chr18:11875000-11876800	Strong transcription	Brain Hippocampus Middle	brain
46	chr18:11875000-11883800	Weak transcription	Primary T cells fromperipheralblood	blood
47	chr18:11875200-11876800	ZNF genes & repeats	ES-I3 Cell Line	embryonic stem cell
48	chr18:11875200-11877000	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
49	chr18:11875400-11877200	Strong transcription	HUES6 Cell Line	embryonic stem cell
50	chr18:11875600-11877000	Strong transcription	HUES64 Cell Line	embryonic stem cell

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