Variant report

Variant	rs3892719
Chromosome Location	chr8:39901028-39901029
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs2929117	0.84[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs4503083	0.83[ASN][1000 genomes]
rs62511408	0.82[ASN][1000 genomes]
rs62511443	0.82[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs62513280	0.84[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs62513281	0.83[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs62513282	0.83[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs62513283	0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv539555	chr8:39683857-40673606	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
2	nsv534582	chr8:39884590-40653224	Weak transcription Enhancers Active TSS Transcr. at gene 5' and 3' Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:39897400-39901200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr8:39897600-39903400	Enhancers	HepG2	liver
3	chr8:39899600-39901200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr8:39899600-39901600	Enhancers	Fetal Intestine Large	intestine
5	chr8:39899600-39901600	Enhancers	Fetal Intestine Small	intestine
6	chr8:39899600-39912000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
7	chr8:39899800-39908800	Weak transcription	Stomach Mucosa	stomach
8	chr8:39900400-39901600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
9	chr8:39900400-39906800	Weak transcription	Liver	Liver
10	chr8:39900600-39903200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
11	chr8:39900600-39906400	Weak transcription	Pancreas	Pancrea
12	chr8:39901000-39901200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
13	chr8:39901000-39901600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links