Variant report

Variant	rs3895535
Chromosome Location	chr6:131879805-131879806
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 4 )

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs2246014	0.82[CHB][hapmap];1.00[AFR][1000 genomes]
rs2608899	0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2608902	0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2608930	0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2608937	0.86[AMR][1000 genomes]
rs2608938	1.00[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs2749934	0.85[CEU][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes]
rs2781635	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2781641	0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2781655	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2781658	0.84[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv515476	chr6:131615425-132228577	Weak transcription Enhancers Flanking Bivalent TSS/Enh Strong transcription Active TSS Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
2	esv2829868	chr6:131729859-131898208	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv886668	chr6:131814865-131954797	Strong transcription Weak transcription Genic enhancers Enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases

mRNA abundance (count:4)

SNP	Gene	Cis/trans	Tissue	Source
rs3895535	ARG1	cis	Whole Blood	GTEx
rs3895535	ARG1	cis	lung	GTEx
rs3895535	MED23	cis	Whole Blood	GTEx
rs3895535	ARG1	cis	Skin Sun Exposed Lower leg	GTEx

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:131877600-131880000	Weak transcription	Adipose Nuclei	Adipose
2	chr6:131878400-131891600	Weak transcription	HepG2	liver
3	chr6:131879000-131883200	Weak transcription	Liver	Liver

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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