Variant report

Variant	rs3897655
Chromosome Location	chr11:102333025-102333026
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	FOXA2	chr11:102332971-102334055	HepG2	liver:	n/a	n/a
2	NFYB	chr11:102332983-102333119	GM12878	blood:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:102321837..102326720-chr11:102328384..102333595,6	MCF-7	breast:
2	chr11:102319252..102322095-chr11:102332062..102334895,2	K562	blood:

Variant related genes	Relation type
ENSG00000255482	TF binding region
ENSG00000152558	Chromatin interaction
ENSG00000255337	Chromatin interaction

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs1893730	0.95[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs2096894	0.92[EUR][1000 genomes]
rs2155839	1.00[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs4754846	1.00[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs562880	0.87[EUR][1000 genomes]
rs6590961	0.87[EUR][1000 genomes]
rs721916	0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3514195	chr11:102118479-102348362	Weak transcription Flanking Active TSS Active TSS Strong transcription Genic enhancers ZNF genes & repeats Enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
2	esv3514197	chr11:102118479-102348362	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
3	nsv1035567	chr11:102264516-102431607	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
4	nsv898334	chr11:102272884-102353192	Weak transcription Flanking Active TSS Strong transcription Enhancers Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:102324200-102337600	Weak transcription	Lung	lung
2	chr11:102324600-102344600	Weak transcription	Colonic Mucosa	Colon
3	chr11:102324800-102335000	Weak transcription	Rectal Mucosa Donor 31	rectum
4	chr11:102324800-102335800	Enhancers	HepG2	liver
5	chr11:102325000-102334600	Enhancers	Liver	Liver
6	chr11:102325000-102335600	Weak transcription	Rectal Mucosa Donor 29	rectum
7	chr11:102325200-102335000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
8	chr11:102325600-102335600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
9	chr11:102326000-102333400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
10	chr11:102326000-102335400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
11	chr11:102326400-102335200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
12	chr11:102326600-102334800	Weak transcription	Sigmoid Colon	Sigmoid Colon
13	chr11:102326600-102337000	Weak transcription	Fetal Thymus	thymus
14	chr11:102327800-102337000	Weak transcription	Placenta	Placenta
15	chr11:102329600-102335000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
16	chr11:102329600-102337200	Weak transcription	Fetal Lung	lung
17	chr11:102330200-102334800	Weak transcription	Primary T helper cells fromperipheralblood	blood
18	chr11:102330600-102333400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
19	chr11:102330800-102333400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
20	chr11:102330800-102335000	Weak transcription	GM12878-XiMat	blood
21	chr11:102331000-102333200	Weak transcription	Primary T cells from cord blood	blood
22	chr11:102331000-102338400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
23	chr11:102331400-102334800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
24	chr11:102332200-102334000	Enhancers	Fetal Intestine Large	intestine
25	chr11:102332200-102334200	Enhancers	Fetal Intestine Small	intestine
26	chr11:102332400-102337400	Weak transcription	Pancreas	Pancrea
27	chr11:102332400-102338600	Weak transcription	Brain Anterior Caudate	brain
28	chr11:102332800-102333200	Weak transcription	Pancreatic Islets	Pancreatic Islet
29	chr11:102332800-102333800	Enhancers	Primary T helper cells PMA-I stimulated	--
30	chr11:102332800-102336400	Weak transcription	Brain Germinal Matrix	brain

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