Variant report

Variant	rs3899258
Chromosome Location	chr5:50256551-50256552
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10461650	0.89[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs10940614	0.81[AMR][1000 genomes]
rs11948423	0.80[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs11960414	0.81[AMR][1000 genomes]
rs11960464	0.81[AMR][1000 genomes]
rs1374038	0.81[AMR][1000 genomes]
rs58676472	0.81[AMR][1000 genomes]
rs58944804	0.81[AMR][1000 genomes]
rs62367363	0.80[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs62367389	0.81[AMR][1000 genomes]
rs62367390	0.81[AMR][1000 genomes]
rs62367391	0.81[AMR][1000 genomes]
rs72758253	0.81[AMR][1000 genomes]
rs7715136	0.87[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1034445	chr5:49986171-50492609	Weak transcription Enhancers Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
2	nsv598116	chr5:50064292-50318550	Active TSS Bivalent/Poised TSS Strong transcription Weak transcription Bivalent Enhancer Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
3	nsv830286	chr5:50165805-50374600	Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Enhancers Active TSS Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:50255400-50258400	Weak transcription	Pancreatic Islets	Pancreatic Islet

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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