Variant report

Variant	rs3901125
Chromosome Location	chr14:81912553-81912554
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs12435104	0.80[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs12887794	0.82[ASN][1000 genomes]
rs12888000	0.82[ASN][1000 genomes]
rs12889412	0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12895006	0.82[ASN][1000 genomes]
rs12896506	0.94[AFR][1000 genomes];0.89[AMR][1000 genomes];0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs3908315	0.82[ASN][1000 genomes]
rs6574656	0.93[AFR][1000 genomes];0.89[ASN][1000 genomes]
rs8008272	0.94[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs8014043	0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3358936	chr14:81786719-81928269	Bivalent Enhancer Flanking Active TSS Weak transcription Strong transcription Enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	n/a
2	nsv1047694	chr14:81831147-82534026	Enhancers Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Flanking Active TSS Genic enhancers Bivalent/Poised TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
3	nsv542145	chr14:81831147-82534026	Weak transcription Active TSS Genic enhancers Enhancers Strong transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:81910000-81919000	Weak transcription	K562	blood
2	chr14:81910600-81915400	Weak transcription	Aorta	Aorta
3	chr14:81912000-81913600	Enhancers	Skeletal Muscle Male	skeletal muscle
4	chr14:81912000-81913800	Enhancers	HSMM	muscle
5	chr14:81912200-81913200	Enhancers	HepG2	liver
6	chr14:81912200-81915000	Enhancers	Fetal Muscle Leg	muscle
7	chr14:81912400-81912600	Bivalent Enhancer	Primary mononuclear cells fromperipheralblood	Blood
8	chr14:81912400-81912600	Enhancers	Placenta	Placenta
9	chr14:81912400-81912800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
10	chr14:81912400-81912800	Bivalent Enhancer	Muscle Satellite Cultured Cells	--
11	chr14:81912400-81912800	Enhancers	HSMMtube	muscle
12	chr14:81912400-81913200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
13	chr14:81912400-81915200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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