Variant report

Variant	rs3902957
Chromosome Location	chr12:49026008-49026009
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs11829853	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11833747	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs11835040	1.00[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs11837277	1.00[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs11837959	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2898086	1.00[AMR][1000 genomes]
rs2898088	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2898089	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs34080613	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs35678179	1.00[AMR][1000 genomes]
rs56934678	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs58539734	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs59815296	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs61496293	0.84[EUR][1000 genomes]
rs61751603	1.00[AMR][1000 genomes]
rs61942054	1.00[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs7299151	0.84[EUR][1000 genomes]
rs74088105	1.00[AMR][1000 genomes]
rs74088110	1.00[AMR][1000 genomes]
rs74089369	1.00[AMR][1000 genomes];0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3332169	chr12:49005807-49150691	Enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' Flanking Active TSS ZNF genes & repeats Weak transcription Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	43 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:49024600-49026200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr12:49025200-49026200	Enhancers	Placenta Amnion	Placenta Amnion

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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