Variant report

Variant	rs3903355
Chromosome Location	chr7:16461739-16461740
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	HEY1	chr7:16460983-16461743	HepG2	liver:	n/a	chr7:16461097-16461112 chr7:16461173-16461188
2	MYC	chr7:16461534-16461863	MCF10A-Er-Src	breast:	n/a	n/a
3	CEBPB	chr7:16461637-16462027	IMR90	lung:	n/a	chr7:16461821-16461832
4	MAFK	chr7:16461484-16461856	HepG2	liver:	n/a	n/a
5	CEBPB	chr7:16461716-16461950	K562	blood:	n/a	chr7:16461821-16461832
6	POLR2A	chr7:16461631-16461771	ProgFib	skin:	n/a	n/a
7	POLR2A	chr7:16459196-16461953	K562	blood:	n/a	n/a
8	POLR2A	chr7:16460026-16462152	MCF10A-Er-Src	breast:	n/a	n/a
9	CEBPB	chr7:16461633-16462030	K562	blood:	n/a	chr7:16461821-16461832
10	GATA3	chr7:16461011-16461815	T-47D	breast:	n/a	n/a
11	MYC	chr7:16460021-16461981	NB4	blood:	n/a	n/a
12	MAX	chr7:16460101-16461830	HepG2	liver:	n/a	n/a
13	TEAD4	chr7:16461393-16462203	ECC-1	luminal epithelium:	n/a	n/a
14	BHLHE40	chr7:16461043-16461748	HepG2	liver:	n/a	chr7:16461142-16461158
15	MXI1	chr7:16459632-16462117	SK-N-SH	brain:	n/a	n/a
16	TEAD4	chr7:16461738-16462115	ECC-1	luminal epithelium:	n/a	n/a
17	MAFK	chr7:16461467-16462279	HepG2	liver:	n/a	n/a
18	FOS	chr7:16461545-16461745	MCF10A-Er-Src	breast:	n/a	n/a
19	CEBPB	chr7:16461526-16462012	K562	blood:	n/a	chr7:16461821-16461832
20	HNF4G	chr7:16461165-16461853	HepG2	liver:	n/a	chr7:16461554-16461569 chr7:16461627-16461642
21	CBX3	chr7:16461523-16462138	K562	blood:	n/a	n/a
22	TRIM28	chr7:16460974-16461902	K562	blood:	n/a	n/a
23	MAX	chr7:16459956-16461765	A549	lung:	n/a	n/a
24	UBTF	chr7:16459533-16461887	K562	blood:	n/a	n/a
25	FOS	chr7:16461440-16461848	MCF10A-Er-Src	breast:	n/a	n/a
26	TCF12	chr7:16460541-16461890	ECC-1	luminal epithelium:	n/a	n/a
27	GATA3	chr7:16461053-16461746	T-47D	breast:	n/a	n/a
28	CUX1	chr7:16461150-16461948	K562	blood:	n/a	n/a
29	REST	chr7:16461335-16461800	MCF-7	breast:	n/a	n/a
30	SPI1	chr7:16461567-16462009	HL-60	blood:	n/a	n/a
31	MAFF	chr7:16461258-16462021	K562	blood:	n/a	chr7:16461659-16461677 chr7:16461706-16461724
32	TBP	chr7:16461359-16461891	HepG2	liver:	n/a	n/a
33	MAX	chr7:16460099-16461892	NB4	blood:	n/a	n/a
34	POLR2A	chr7:16458923-16461797	K562	blood:	n/a	n/a
35	CEBPB	chr7:16461652-16462008	A549	lung:	n/a	chr7:16461821-16461832
36	MAFK	chr7:16461505-16461855	IMR90	lung:	n/a	n/a
37	EP300	chr7:16460909-16462135	ECC-1	luminal epithelium:	n/a	chr7:16461194-16461210
38	MAX	chr7:16460046-16461786	HepG2	liver:	n/a	n/a
39	CEBPB	chr7:16461646-16462018	HepG2	liver:	n/a	chr7:16461821-16461832
40	POLR2A	chr7:16459172-16462043	K562	blood:	n/a	n/a
41	POLR2A	chr7:16460015-16461770	NB4	blood:	n/a	n/a
42	TCF12	chr7:16461324-16462178	ECC-1	luminal epithelium:	n/a	chr7:16461886-16461894
43	TCF12	chr7:16459960-16461790	A549	lung:	n/a	n/a
44	MAFF	chr7:16461493-16462202	HepG2	liver:	n/a	chr7:16461659-16461677 chr7:16461706-16461724
45	CEBPB	chr7:16461577-16462027	ECC-1	luminal epithelium:	n/a	chr7:16461821-16461832
46	KAP1	chr7:16459710-16461930	HEK293	kidney:	n/a	n/a
47	JUND	chr7:16461010-16461840	K562	blood:	n/a	n/a
48	TEAD4	chr7:16461034-16462208	K562	blood:	n/a	n/a
49	HNF4A	chr7:16461497-16461824	HepG2	liver:	n/a	chr7:16461553-16461568
50	SRF	chr7:16461595-16462162	ECC-1	luminal epithelium:	n/a	chr7:16461908-16461921

No.	Distal block	Cell Line	Cell type
1	chr7:16460189..16463814-chr7:16683756..16686111,3	MCF-7	breast:
2	chr7:16460318..16462710-chr7:16792580..16794734,3	K562	blood:
3	chr7:16456001..16461931-chr7:16682283..16687700,6	K562	blood:
4	chr7:16302978..16309646-chr7:16456908..16462647,13	K562	blood:
5	chr7:16307891..16309646-chr7:16460887..16462647,2	K562	blood:
6	chr7:16161067..16163627-chr7:16461364..16462917,2	K562	blood:
7	chr7:16309917..16312167-chr7:16461370..16463570,2	K562	blood:
8	chr7:16242935..16245142-chr7:16460996..16462500,2	MCF-7	breast:

Variant related genes	Relation type
ISPD	TF binding region
ENSG00000106537	Chromatin interaction
ENSG00000136261	Chromatin interaction
ENSG00000229688	Chromatin interaction
ENSG00000106524	Chromatin interaction

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs6967237	0.84[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1016642	chr7:15884061-16799788	Genic enhancers Weak transcription Flanking Active TSS Active TSS Enhancers Strong transcription ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	56 gene(s)	inside rSNPs	diseases
2	esv2759514	chr7:16236162-16527390	Flanking Active TSS Enhancers Active TSS Strong transcription Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
3	esv2758105	chr7:16272822-16527390	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
4	nsv1034151	chr7:16415497-16578081	ZNF genes & repeats Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Active TSS Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:95 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:16459600-16461800	Flanking Active TSS	Muscle Satellite Cultured Cells	--
2	chr7:16459600-16462000	Flanking Active TSS	Stomach Smooth Muscle	stomach
3	chr7:16459800-16461800	Active TSS	ES-WA7 Cell Line	embryonic stem cell
4	chr7:16459800-16461800	Active TSS	Right Ventricle	heart
5	chr7:16461000-16461800	Flanking Active TSS	Adipose Nuclei	Adipose
6	chr7:16461200-16461800	Flanking Active TSS	Brain Hippocampus Middle	brain
7	chr7:16461200-16461800	Flanking Active TSS	Colon Smooth Muscle	Colon
8	chr7:16461200-16461800	Flanking Active TSS	Fetal Adrenal Gland	Adrenal Gland
9	chr7:16461200-16461800	Flanking Active TSS	Fetal Heart	heart
10	chr7:16461200-16461800	Flanking Active TSS	Rectal Mucosa Donor 29	rectum
11	chr7:16461200-16461800	Flanking Active TSS	Rectal Smooth Muscle	rectum
12	chr7:16461200-16461800	Flanking Active TSS	HUVEC	blood vessel
13	chr7:16461200-16461800	Flanking Bivalent TSS/Enh	Monocytes-CD14+_RO01746	blood
14	chr7:16461200-16461800	Flanking Active TSS	NHDF-Ad	bronchial
15	chr7:16461200-16461800	Flanking Active TSS	NHEK	skin
16	chr7:16461200-16462000	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
17	chr7:16461200-16462000	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
18	chr7:16461200-16462000	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
19	chr7:16461200-16462000	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
20	chr7:16461200-16462000	Flanking Active TSS	Brain Inferior Temporal Lobe	brain
21	chr7:16461200-16462000	Flanking Active TSS	Duodenum Smooth Muscle	Duodenum
22	chr7:16461200-16462000	Flanking Active TSS	Fetal Lung	lung
23	chr7:16461200-16462000	Flanking Active TSS	Skeletal Muscle Female	skeletal muscle
24	chr7:16461200-16462000	Flanking Active TSS	Osteobl	bone
25	chr7:16461400-16461800	Flanking Bivalent TSS/Enh	HUES48 Cell Line	embryonic stem cell
26	chr7:16461400-16461800	Flanking Bivalent TSS/Enh	iPS-15b Cell Line	embryonic stem cell
27	chr7:16461400-16461800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
28	chr7:16461400-16461800	Flanking Active TSS	Brain Angular Gyrus	brain
29	chr7:16461400-16461800	Flanking Active TSS	Brain Anterior Caudate	brain
30	chr7:16461400-16461800	Flanking Active TSS	HSMM	muscle
31	chr7:16461400-16462000	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
32	chr7:16461400-16462000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
33	chr7:16461400-16462000	Enhancers	Primary T helper cells fromperipheralblood	blood
34	chr7:16461400-16462000	Flanking Active TSS	Brain Cingulate Gyrus	brain
35	chr7:16461400-16462000	Flanking Active TSS	Brain Substantia Nigra	brain
36	chr7:16461400-16462000	Flanking Active TSS	Fetal Kidney	kidney
37	chr7:16461400-16462000	Enhancers	Placenta Amnion	Placenta Amnion
38	chr7:16461400-16462000	Flanking Active TSS	Skeletal Muscle Male	skeletal muscle
39	chr7:16461400-16462000	Enhancers	Small Intestine	intestine
40	chr7:16461400-16462000	Flanking Active TSS	A549	lung
41	chr7:16461400-16462000	Flanking Active TSS	HepG2	liver
42	chr7:16461400-16462200	Flanking Active TSS	K562	blood
43	chr7:16461400-16462400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
44	chr7:16461400-16462400	Weak transcription	Left Ventricle	heart
45	chr7:16461400-16462800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
46	chr7:16461400-16463000	Enhancers	Stomach Mucosa	stomach
47	chr7:16461400-16469000	Weak transcription	Aorta	Aorta
48	chr7:16461600-16461800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
49	chr7:16461600-16461800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
50	chr7:16461600-16461800	Flanking Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links