Variant report

Variant	rs390425
Chromosome Location	chr2:35043204-35043205
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 50 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs10169451	0.88[ASN][1000 genomes]
rs1017457	0.81[ASN][1000 genomes]
rs10178779	0.85[ASN][1000 genomes]
rs10192433	0.81[ASN][1000 genomes]
rs11124400	0.85[ASN][1000 genomes]
rs11695987	0.85[ASN][1000 genomes]
rs12468433	0.85[ASN][1000 genomes]
rs13313789	0.81[ASN][1000 genomes]
rs13393488	0.83[ASN][1000 genomes]
rs13402513	0.86[ASN][1000 genomes]
rs13418932	0.82[ASN][1000 genomes]
rs17339508	0.81[ASN][1000 genomes]
rs2083210	0.85[ASN][1000 genomes]
rs2118672	0.86[ASN][1000 genomes]
rs2259197	0.86[ASN][1000 genomes]
rs280680	0.85[ASN][1000 genomes]
rs280681	0.85[ASN][1000 genomes]
rs280687	0.86[ASN][1000 genomes]
rs28524538	0.90[ASN][1000 genomes]
rs28607949	0.84[AFR][1000 genomes];0.91[AMR][1000 genomes];0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs28660144	0.90[ASN][1000 genomes]
rs372404	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs380322	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs385823	0.86[ASN][1000 genomes]
rs3925971	0.85[ASN][1000 genomes]
rs396370	0.86[ASN][1000 genomes]
rs398276	0.86[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs417923	0.86[ASN][1000 genomes]
rs443733	0.85[ASN][1000 genomes]
rs448631	0.85[ASN][1000 genomes]
rs59771395	0.81[ASN][1000 genomes]
rs60878796	0.81[ASN][1000 genomes]
rs9308960	0.85[ASN][1000 genomes]
rs9941604	0.89[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:16 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv873804	chr2:34156867-35047107	Weak transcription Active TSS Enhancers ZNF genes & repeats Flanking Active TSS Genic enhancers Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
2	nsv873810	chr2:34456200-35047107	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
3	nsv873821	chr2:34738616-35416075	Enhancers Weak transcription Active TSS Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
4	nsv1003361	chr2:34746445-35202302	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
5	nsv873825	chr2:34892832-35115848	Enhancers Active TSS Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
6	nsv1003322	chr2:34898412-35216795	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
7	nsv1010863	chr2:34922329-35052108	Weak transcription Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS Strong transcription	TF binding region Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	n/a
8	nsv1002915	chr2:34923003-35052108	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers	TF binding region Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	n/a
9	nsv873830	chr2:34972791-35047107	Enhancers Weak transcription Active TSS Genic enhancers ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	n/a
10	nsv524038	chr2:34990937-35073607	Enhancers Active TSS Weak transcription ZNF genes & repeats Genic enhancers	TF binding region Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
11	nsv873831	chr2:35013851-35092762	ZNF genes & repeats Enhancers Weak transcription Active TSS Genic enhancers	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
12	nsv873832	chr2:35013851-35095373	Enhancers Weak transcription Active TSS ZNF genes & repeats Genic enhancers	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
13	nsv873833	chr2:35022419-35115848	Enhancers Active TSS Weak transcription Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
14	esv1837864	chr2:35030699-35115979	Enhancers Weak transcription Active TSS Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
15	nsv873834	chr2:35037733-35138518	Weak transcription Enhancers Active TSS Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
16	esv3436972	chr2:35039248-35044546	Enhancers Weak transcription	TF binding region lncRNA	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:35029600-35046600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr2:35041400-35044400	Weak transcription	H9 Cell Line	embryonic stem cell

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