Variant report

Variant	rs3904635
Chromosome Location	chr9:72377577-72377578
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:72375011..72377307-chr9:72377548..72379098,2	K562	blood:
2	chr9:72375672..72377949-chr9:72385605..72387785,2	K562	blood:

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10868041	0.83[AMR][1000 genomes]
rs11140185	0.83[AMR][1000 genomes]
rs11140189	0.83[AMR][1000 genomes]
rs11140204	0.83[AMR][1000 genomes]
rs11140205	0.83[AMR][1000 genomes]
rs11140206	0.83[AMR][1000 genomes]
rs11140208	0.83[AMR][1000 genomes]
rs11791457	0.83[AMR][1000 genomes]
rs11792104	0.83[AMR][1000 genomes]
rs12376529	0.81[AMR][1000 genomes]
rs13293770	0.83[AMR][1000 genomes]
rs1536993	0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4273913	0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs56040923	0.83[AMR][1000 genomes]
rs7027072	0.96[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7866040	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv471309	chr9:72273898-72410323	Weak transcription Genic enhancers Strong transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
2	nsv1050920	chr9:72345297-72579301	Weak transcription Enhancers Strong transcription Genic enhancers Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
3	nsv831611	chr9:72361905-72512134	Weak transcription Enhancers Genic enhancers Active TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
4	nsv893438	chr9:72363992-72720438	Weak transcription Enhancers Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:34 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:72375400-72377800	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr9:72375400-72379200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr9:72375600-72377600	Weak transcription	Right Atrium	heart
4	chr9:72375600-72379000	Weak transcription	Fetal Intestine Large	intestine
5	chr9:72375600-72379000	Weak transcription	Fetal Kidney	kidney
6	chr9:72375600-72383000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
7	chr9:72375600-72383200	Weak transcription	HSMMtube	muscle
8	chr9:72375800-72378000	Enhancers	iPS-15b Cell Line	embryonic stem cell
9	chr9:72375800-72379000	Weak transcription	HepG2	liver
10	chr9:72376400-72377600	Enhancers	HUES6 Cell Line	embryonic stem cell
11	chr9:72376400-72377800	Enhancers	H1 Cell Line	embryonic stem cell
12	chr9:72376800-72378800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr9:72377000-72377600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
14	chr9:72377000-72378000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
15	chr9:72377000-72378200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
16	chr9:72377200-72378000	Enhancers	Muscle Satellite Cultured Cells	--
17	chr9:72377200-72378000	Enhancers	Cortex derived primary cultured neurospheres	brain
18	chr9:72377200-72378200	Flanking Active TSS	HUES48 Cell Line	embryonic stem cell
19	chr9:72377200-72378200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
20	chr9:72377200-72383400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
21	chr9:72377400-72377800	Flanking Active TSS	ES-I3 Cell Line	embryonic stem cell
22	chr9:72377400-72377800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
23	chr9:72377400-72378000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
24	chr9:72377400-72378000	Flanking Active TSS	iPS-18 Cell Line	embryonic stem cell
25	chr9:72377400-72378000	Flanking Active TSS	iPS-20b Cell Line	embryonic stem cell
26	chr9:72377400-72378000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
27	chr9:72377400-72378000	Enhancers	A549	lung
28	chr9:72377400-72378000	Enhancers	NH-A	brain
29	chr9:72377400-72378000	Enhancers	NHDF-Ad	bronchial
30	chr9:72377400-72378000	Enhancers	Osteobl	bone
31	chr9:72377400-72378200	Flanking Active TSS	HUES64 Cell Line	embryonic stem cell
32	chr9:72377400-72378200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
33	chr9:72377400-72378400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
34	chr9:72377400-72378600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin

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