Variant report
| Variant | rs3904702 |
|---|---|
| Chromosome Location | chr1:166627770-166627771 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:2)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:2 , 50 per page) page:
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| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000234984 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:25)
| rs_ID | r2[population] |
|---|---|
| rs1662067 | 0.80[ASN][1000 genomes] |
| rs2197148 | 0.99[ASN][1000 genomes] |
| rs474189 | 0.85[JPT][hapmap];0.80[ASN][1000 genomes] |
| rs476074 | 1.00[JPT][hapmap] |
| rs482267 | 0.82[ASN][1000 genomes] |
| rs486538 | 0.84[ASN][1000 genomes] |
| rs491367 | 0.92[ASN][1000 genomes] |
| rs505636 | 0.82[ASN][1000 genomes] |
| rs510265 | 0.85[JPT][hapmap];0.80[ASN][1000 genomes] |
| rs511062 | 0.87[ASN][1000 genomes] |
| rs514026 | 0.92[ASN][1000 genomes] |
| rs516402 | 0.85[JPT][hapmap];0.80[ASN][1000 genomes] |
| rs537629 | 1.00[JPT][hapmap] |
| rs539246 | 0.85[JPT][hapmap];0.81[ASN][1000 genomes] |
| rs542397 | 0.84[ASN][1000 genomes] |
| rs548413 | 0.85[ASN][1000 genomes] |
| rs552888 | 1.00[JPT][hapmap];0.82[ASN][1000 genomes] |
| rs555316 | 1.00[JPT][hapmap];0.82[ASN][1000 genomes] |
| rs55833452 | 0.81[ASN][1000 genomes] |
| rs558874 | 1.00[JPT][hapmap] |
| rs565376 | 1.00[JPT][hapmap];0.84[ASN][1000 genomes] |
| rs570565 | 0.89[CHB][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes] |
| rs576631 | 0.87[ASN][1000 genomes] |
| rs578278 | 0.97[ASN][1000 genomes] |
| rs71630359 | 0.81[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
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| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv916491 | chr1:166000783-166948513 | Bivalent/Poised TSS Weak transcription Active TSS Enhancers Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 38 gene(s) | inside rSNPs | diseases |
| 2 | esv2757759 | chr1:166491879-166650985 | Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | diseases |
| 3 | esv2758975 | chr1:166491879-166650985 | ZNF genes & repeats Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | diseases |
| 4 | esv2752389 | chr1:166625342-166706342 | Bivalent Enhancer ZNF genes & repeats Enhancers Flanking Active TSS Weak transcription Active TSS | TF binding regionChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
