The 2.0 version of rSNPBase

Variant report

Variant rs3907248
Chromosome Location chr14:56636265-56636266
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:43 , 50 per page) page: 1
No. Chromosome Location Chromatin state Cell line Tissue
1 chr14:56615600-56639800 Weak transcription iPS DF 19.11 Cell Line embryonic stem cell
2 chr14:56616800-56640200 Weak transcription Fetal Stomach stomach
3 chr14:56621400-56637600 Weak transcription Small Intestine intestine
4 chr14:56627200-56645000 Weak transcription ES-UCSF4 Cell Line embryonic stem cell
5 chr14:56632200-56638000 Enhancers Dnd41 blood
6 chr14:56633200-56638800 Weak transcription iPS-15b Cell Line embryonic stem cell
7 chr14:56633800-56640200 Weak transcription Brain Germinal Matrix brain
8 chr14:56633800-56645000 Weak transcription Primary B cells from cord blood blood
9 chr14:56634200-56638800 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
10 chr14:56634400-56636400 Genic enhancers Thymus Thymus
11 chr14:56634400-56639200 Enhancers Fetal Thymus thymus
12 chr14:56634400-56644200 Enhancers Pancreas Pancrea
13 chr14:56634600-56638600 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain
14 chr14:56634600-56638800 Enhancers Primary hematopoietic stem cells G-CSF-mobilized Male --
15 chr14:56634800-56638400 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
16 chr14:56634800-56638800 Weak transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
17 chr14:56634800-56638800 Weak transcription Brain Substantia Nigra brain
18 chr14:56634800-56639000 Weak transcription Adipose Nuclei Adipose
19 chr14:56635000-56636400 Enhancers Breast Myoepithelial Primary Cells Breast
20 chr14:56635000-56638000 Weak transcription Brain Hippocampus Middle brain
21 chr14:56635000-56638400 Weak transcription Primary hematopoietic stem cells blood
22 chr14:56635000-56638400 Weak transcription Gastric stomach
23 chr14:56635000-56638800 Weak transcription Brain Anterior Caudate brain
24 chr14:56635000-56638800 Weak transcription Brain Inferior Temporal Lobe brain
25 chr14:56635000-56654600 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
26 chr14:56635200-56638800 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
27 chr14:56635400-56638200 Weak transcription Esophagus oesophagus
28 chr14:56635600-56640400 Enhancers Stomach Mucosa stomach
29 chr14:56635600-56647200 Weak transcription Ovary ovary
30 chr14:56635800-56636400 Enhancers Left Ventricle heart
31 chr14:56635800-56636600 Weak transcription Placenta Placenta
32 chr14:56635800-56637000 Genic enhancers IMR90 fetal lung fibroblasts Cell Line lung
33 chr14:56635800-56643800 Weak transcription Fetal Brain Female brain
34 chr14:56636000-56636400 Enhancers Primary T helper naive cells from peripheral blood blood
35 chr14:56636000-56636400 Enhancers Primary T helper naive cells fromperipheralblood blood
36 chr14:56636000-56636800 Enhancers Foreskin Melanocyte Primary Cells skin03 Skin
37 chr14:56636000-56638800 Weak transcription Spleen Spleen
38 chr14:56636000-56639000 Weak transcription Skeletal Muscle Male skeletal muscle
39 chr14:56636000-56640800 Enhancers Primary T cells from cord blood blood
40 chr14:56636200-56637000 Enhancers Sigmoid Colon Sigmoid Colon
41 chr14:56636200-56637200 Weak transcription Fetal Intestine Small intestine
42 chr14:56636200-56638200 Weak transcription Lung lung
43 chr14:56636200-56638800 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin

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Last update: Aug 31, 2015