Variant report

Variant	rs3907611
Chromosome Location	chr3:55606108-55606109
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 3 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs73076937	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2757871	chr3:55490629-55665793	Flanking Bivalent TSS/Enh Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
2	esv2759150	chr3:55490629-55665793	Active TSS Bivalent/Poised TSS Flanking Active TSS Enhancers Genic enhancers Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:67 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:55601600-55606200	Enhancers	Fetal Brain Male	brain
2	chr3:55602600-55608600	Enhancers	Fetal Heart	heart
3	chr3:55602800-55607000	Enhancers	Breast Myoepithelial Primary Cells	Breast
4	chr3:55603200-55606600	Enhancers	iPS-15b Cell Line	embryonic stem cell
5	chr3:55603600-55607600	Enhancers	Placenta	Placenta
6	chr3:55603800-55608800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
7	chr3:55604200-55606600	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
8	chr3:55604200-55606800	Enhancers	HUES64 Cell Line	embryonic stem cell
9	chr3:55604200-55606800	Enhancers	iPS-18 Cell Line	embryonic stem cell
10	chr3:55604200-55606800	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
11	chr3:55604200-55606800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
12	chr3:55604200-55607000	Enhancers	H1 Cell Line	embryonic stem cell
13	chr3:55604200-55607200	Enhancers	Placenta Amnion	Placenta Amnion
14	chr3:55604400-55606600	Enhancers	HUES48 Cell Line	embryonic stem cell
15	chr3:55604400-55606800	Enhancers	ES-I3 Cell Line	embryonic stem cell
16	chr3:55604400-55607000	Enhancers	iPS-20b Cell Line	embryonic stem cell
17	chr3:55604600-55606200	Enhancers	Fetal Intestine Small	intestine
18	chr3:55604600-55606200	Enhancers	HSMM	muscle
19	chr3:55604600-55606600	Enhancers	H9 Cell Line	embryonic stem cell
20	chr3:55604600-55606600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
21	chr3:55604600-55606800	Enhancers	ES-WA7 Cell Line	embryonic stem cell
22	chr3:55605200-55606200	Enhancers	GM12878-XiMat	blood
23	chr3:55605200-55606400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
24	chr3:55605200-55606400	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
25	chr3:55605200-55607000	Enhancers	Fetal Stomach	stomach
26	chr3:55605200-55607000	Enhancers	Fetal Thymus	thymus
27	chr3:55605400-55606200	Enhancers	Thymus	Thymus
28	chr3:55605400-55606400	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
29	chr3:55605400-55606400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
30	chr3:55605400-55606400	Enhancers	Fetal Intestine Large	intestine
31	chr3:55605400-55606600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
32	chr3:55605400-55606600	Enhancers	Brain Germinal Matrix	brain
33	chr3:55605400-55608400	Enhancers	Rectal Smooth Muscle	rectum
34	chr3:55605600-55606200	Enhancers	Duodenum Smooth Muscle	Duodenum
35	chr3:55605600-55606200	Enhancers	Spleen	Spleen
36	chr3:55605600-55606400	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
37	chr3:55605600-55606400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
38	chr3:55605600-55606400	Enhancers	Right Ventricle	heart
39	chr3:55605600-55606400	Enhancers	NH-A	brain
40	chr3:55605600-55606600	Enhancers	Cortex derived primary cultured neurospheres	brain
41	chr3:55605600-55607000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
42	chr3:55605600-55607800	Enhancers	Right Atrium	heart
43	chr3:55605800-55606200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
44	chr3:55605800-55606200	Enhancers	Brain Angular Gyrus	brain
45	chr3:55605800-55606400	Enhancers	Muscle Satellite Cultured Cells	--
46	chr3:55605800-55606400	Enhancers	Brain Hippocampus Middle	brain
47	chr3:55605800-55606400	Flanking Active TSS	Stomach Smooth Muscle	stomach
48	chr3:55605800-55606600	Enhancers	Fetal Muscle Leg	muscle
49	chr3:55605800-55610800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
50	chr3:55606000-55606200	Enhancers	Brain Anterior Caudate	brain

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