Variant report

Variant	rs3909111
Chromosome Location	chr6:31096128-31096129
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:10)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:10 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:31081982..31084650-chr6:31092935..31096389,3	MCF-7	breast:
2	chr6:31090987..31092952-chr6:31095057..31097204,2	K562	blood:
3	chr6:31090881..31093261-chr6:31094192..31096306,2	K562	blood:
4	chr6:31095559..31096550-chr6:31334364..31334869,2	K562	blood:
5	chr6:30884097..30886583-chr6:31095164..31097227,2	K562	blood:
6	chr6:31093740..31096659-chr6:31097265..31098967,2	K562	blood:
7	chr6:31095053..31098000-chr6:31105579..31108492,2	K562	blood:
8	chr6:31086431..31090113-chr6:31095332..31098474,3	K562	blood:
9	chr6:31093836..31097468-chr6:31099358..31102420,4	K562	blood:
10	chr6:31075272..31076774-chr6:31094558..31097353,2	K562	blood:

No data

Variant related genes	Relation type
ENSG00000204538	Chromatin interaction
ENSG00000204539	Chromatin interaction
ENSG00000137411	Chromatin interaction
ENSG00000204540	Chromatin interaction
ENSG00000228432	Chromatin interaction

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs12199460	0.82[ASN][1000 genomes]
rs3778639	0.82[ASN][1000 genomes]
rs3778640	0.82[ASN][1000 genomes]
rs6932086	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:16 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3519970	chr6:30382942-31378788	Genic enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Enhancers Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	1030 gene(s)	inside rSNPs	diseases
2	esv3519971	chr6:30382942-31378788	Bivalent Enhancer Flanking Active TSS Active TSS Weak transcription Enhancers Transcr. at gene 5' and 3' Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	1030 gene(s)	inside rSNPs	diseases
3	nsv601481	chr6:30422632-31284253	Weak transcription Genic enhancers Transcr. at gene 5' and 3' Flanking Active TSS Strong transcription Enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	1012 gene(s)	inside rSNPs	diseases
4	nsv1015372	chr6:30704734-31582152	Active TSS Flanking Active TSS Enhancers Weak transcription Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	334 gene(s)	inside rSNPs	diseases
5	nsv538173	chr6:30704734-31582152	Flanking Active TSS Enhancers Weak transcription Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	334 gene(s)	inside rSNPs	diseases
6	nsv1029442	chr6:31006647-31449207	Flanking Active TSS Bivalent Enhancer Weak transcription Enhancers Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	82 gene(s)	inside rSNPs	diseases
7	nsv427750	chr6:31028290-31234581	Flanking Active TSS Weak transcription Active TSS Enhancers Strong transcription Bivalent/Poised TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	47 gene(s)	inside rSNPs	diseases
8	nsv428140	chr6:31028290-31462106	Flanking Bivalent TSS/Enh Flanking Active TSS Enhancers Weak transcription Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	89 gene(s)	inside rSNPs	diseases
9	esv2758042	chr6:31028290-31497106	Weak transcription Active TSS Bivalent/Poised TSS Enhancers Genic enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	101 gene(s)	inside rSNPs	diseases
10	esv2759414	chr6:31028290-31542308	Flanking Active TSS Active TSS Bivalent/Poised TSS Weak transcription Enhancers Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	151 gene(s)	inside rSNPs	diseases
11	nsv1033227	chr6:31071547-31101674	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Strong transcription Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
12	nsv525933	chr6:31081205-31142245	Weak transcription Active TSS Enhancers Flanking Active TSS Bivalent Enhancer Genic enhancers Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
13	nsv884137	chr6:31082361-31129310	Weak transcription Active TSS Strong transcription Enhancers Bivalent Enhancer Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
14	esv1820685	chr6:31083813-31097453	Enhancers Weak transcription Genic enhancers Bivalent Enhancer Strong transcription Active TSS Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
15	esv1799829	chr6:31087133-31097183	Enhancers Weak transcription Bivalent Enhancer Strong transcription Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
16	esv33699	chr6:31094845-31110011	Weak transcription Active TSS Enhancers Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:31083200-31105400	Weak transcription	Spleen	Spleen
2	chr6:31089000-31096200	Enhancers	Lung	lung
3	chr6:31093200-31096600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr6:31093400-31105400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
5	chr6:31093400-31107000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
6	chr6:31093800-31097800	Enhancers	Breast Myoepithelial Primary Cells	Breast
7	chr6:31094000-31097000	Weak transcription	Pancreas	Pancrea
8	chr6:31094600-31099400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
9	chr6:31094800-31097000	Weak transcription	Esophagus	oesophagus
10	chr6:31095000-31096400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
11	chr6:31095000-31097200	Weak transcription	Left Ventricle	heart
12	chr6:31095000-31105400	Weak transcription	Placenta Amnion	Placenta Amnion
13	chr6:31095000-31105400	Weak transcription	HMEC	breast
14	chr6:31095600-31096200	Enhancers	Primary T killer naive cells fromperipheralblood	blood
15	chr6:31095600-31097400	Enhancers	HUES6 Cell Line	embryonic stem cell
16	chr6:31095800-31096200	Enhancers	Skeletal Muscle Female	skeletal muscle
17	chr6:31095800-31096400	Enhancers	ES-WA7 Cell Line	embryonic stem cell
18	chr6:31095800-31096400	Enhancers	Primary T helper naive cells fromperipheralblood	blood
19	chr6:31095800-31096400	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
20	chr6:31095800-31096400	Enhancers	Primary T helper cells PMA-I stimulated	--
21	chr6:31095800-31096400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
22	chr6:31095800-31097000	Enhancers	H1 Cell Line	embryonic stem cell
23	chr6:31096000-31096200	Weak transcription	Colonic Mucosa	Colon
24	chr6:31096000-31096400	Enhancers	Primary T killer memory cells from peripheral blood	blood
25	chr6:31096000-31096400	Weak transcription	NHEK	skin
26	chr6:31096000-31097000	Weak transcription	GM12878-XiMat	blood
27	chr6:31096000-31101000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
28	chr6:31096000-31105400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
29	chr6:31096000-31107000	Weak transcription	Right Atrium	heart

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