Variant report

Variant	rs3910442
Chromosome Location	chr12:29676941-29676942
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs2288131	0.85[MEX][hapmap]
rs2288133	0.84[MEX][hapmap]
rs2350532	0.84[MEX][hapmap]
rs299459	0.94[MEX][hapmap]
rs299472	0.84[MEX][hapmap]
rs3910440	0.81[AMR][1000 genomes]
rs3910441	0.84[MEX][hapmap];0.81[AMR][1000 genomes]
rs7294502	0.89[MEX][hapmap]
rs7310555	0.89[MEX][hapmap]
rs7310895	0.89[MEX][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1053641	chr12:29268813-29854413	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
2	nsv469190	chr12:29612425-29811471	Flanking Active TSS Enhancers Weak transcription Strong transcription Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
3	nsv557917	chr12:29612425-29811471	Enhancers Weak transcription Genic enhancers Active TSS Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:37 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:29650400-29699000	Weak transcription	Right Ventricle	heart
2	chr12:29658000-29680200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
3	chr12:29658000-29681200	Weak transcription	Colon Smooth Muscle	Colon
4	chr12:29658400-29690200	Weak transcription	HMEC	breast
5	chr12:29658600-29678800	Weak transcription	HUES64 Cell Line	embryonic stem cell
6	chr12:29660800-29690000	Weak transcription	NHDF-Ad	bronchial
7	chr12:29665400-29725400	Weak transcription	Brain Cingulate Gyrus	brain
8	chr12:29667000-29680200	Weak transcription	Fetal Kidney	kidney
9	chr12:29667200-29695600	Weak transcription	Ovary	ovary
10	chr12:29668600-29690000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
11	chr12:29668600-29695800	Weak transcription	Aorta	Aorta
12	chr12:29668800-29706000	Weak transcription	Cortex derived primary cultured neurospheres	brain
13	chr12:29668800-29716600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
14	chr12:29670600-29677400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
15	chr12:29670600-29680200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
16	chr12:29670600-29687000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
17	chr12:29670600-29687800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
18	chr12:29670600-29697400	Weak transcription	Skeletal Muscle Male	skeletal muscle
19	chr12:29670600-29699000	Weak transcription	Duodenum Smooth Muscle	Duodenum
20	chr12:29671000-29688000	Weak transcription	Fetal Muscle Leg	muscle
21	chr12:29671000-29697200	Weak transcription	Spleen	Spleen
22	chr12:29671600-29681000	Weak transcription	Adipose Nuclei	Adipose
23	chr12:29671600-29681000	Weak transcription	Skeletal Muscle Female	skeletal muscle
24	chr12:29671600-29695400	Weak transcription	Fetal Stomach	stomach
25	chr12:29671600-29697200	Weak transcription	Left Ventricle	heart
26	chr12:29672200-29680200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
27	chr12:29672600-29686000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
28	chr12:29673600-29708800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
29	chr12:29673800-29680200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
30	chr12:29673800-29687600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
31	chr12:29675200-29678800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
32	chr12:29675400-29677600	Weak transcription	Muscle Satellite Cultured Cells	--
33	chr12:29675400-29681000	Weak transcription	Stomach Smooth Muscle	stomach
34	chr12:29675400-29686400	Weak transcription	HSMM	muscle
35	chr12:29675800-29689400	Weak transcription	Hela-S3	cervix
36	chr12:29676000-29680400	Weak transcription	Fetal Heart	heart
37	chr12:29676400-29683200	Weak transcription	Psoas Muscle	Psoas

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