Variant report

Variant	rs3911296
Chromosome Location	chr1:77835938-77835939
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs10873933	0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs10873934	0.93[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs11162328	0.93[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs1840246	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6659899	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1005183	chr1:77728990-77949309	Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv535010	chr1:77728990-77949309	Bivalent Enhancer Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv932557	chr1:77730247-77958687	Flanking Active TSS Enhancers Strong transcription Weak transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
4	nsv1003714	chr1:77756861-77949309	Weak transcription Strong transcription Enhancers Flanking Active TSS Genic enhancers Bivalent Enhancer Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
5	nsv470719	chr1:77774413-78269207	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
6	nsv546591	chr1:77774413-78269207	Active TSS Weak transcription Flanking Active TSS Enhancers Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
7	esv2764210	chr1:77825478-77838400	Flanking Active TSS Weak transcription Enhancers Active TSS Genic enhancers Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:33 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:77795000-77836400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
2	chr1:77803400-77839200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
3	chr1:77820400-77836400	Weak transcription	Primary T cells from cord blood	blood
4	chr1:77824400-77836400	Weak transcription	Brain Anterior Caudate	brain
5	chr1:77826200-77836400	Weak transcription	Primary T helper cells fromperipheralblood	blood
6	chr1:77834000-77839800	Enhancers	NHDF-Ad	bronchial
7	chr1:77834200-77836400	Enhancers	Muscle Satellite Cultured Cells	--
8	chr1:77834200-77836600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
9	chr1:77834200-77839000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
10	chr1:77835200-77837200	Enhancers	Brain Cingulate Gyrus	brain
11	chr1:77835200-77838000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
12	chr1:77835600-77836000	Flanking Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
13	chr1:77835600-77836000	Enhancers	Brain Angular Gyrus	brain
14	chr1:77835600-77836000	Flanking Active TSS	Brain Hippocampus Middle	brain
15	chr1:77835600-77836000	Flanking Active TSS	HSMM	muscle
16	chr1:77835600-77836000	Flanking Active TSS	Osteobl	bone
17	chr1:77835600-77836400	Enhancers	NHLF	lung
18	chr1:77835600-77836600	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
19	chr1:77835600-77837000	Enhancers	HSMMtube	muscle
20	chr1:77835600-77837200	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
21	chr1:77835600-77837400	Enhancers	Primary hematopoietic stem cells short term culture	blood
22	chr1:77835600-77837400	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
23	chr1:77835600-77837400	Enhancers	NH-A	brain
24	chr1:77835600-77838000	Enhancers	Primary T helper naive cells fromperipheralblood	blood
25	chr1:77835800-77836000	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
26	chr1:77835800-77836000	Flanking Active TSS	Brain Substantia Nigra	brain
27	chr1:77835800-77836600	Enhancers	Primary T killer naive cells fromperipheralblood	blood
28	chr1:77835800-77837000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
29	chr1:77835800-77837000	Enhancers	Brain Inferior Temporal Lobe	brain
30	chr1:77835800-77837200	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
31	chr1:77835800-77837200	Enhancers	Fetal Stomach	stomach
32	chr1:77835800-77837400	Enhancers	HMEC	breast
33	chr1:77835800-77846400	Weak transcription	Aorta	Aorta

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