Variant report

Variant	rs3911835
Chromosome Location	chr4:15869829-15869830
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:36)
CpG islands
(count:0)
Chromatin interactive
region (count:1)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:36 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	RAD21	chr4:15869739-15870143	HCT-116	colon:	n/a	n/a
2	CTCF	chr4:15869780-15869930	A549	lung:	n/a	n/a
3	CTCF	chr4:15869807-15869962	MCF-7	breast:	n/a	n/a
4	CTCF	chr4:15869800-15869950	AG09309	skin:	n/a	n/a
5	RAD21	chr4:15869748-15870063	Hela-S3	cervix:	n/a	n/a
6	CTCF	chr4:15869820-15869970	HMF	breast:	n/a	n/a
7	CTCF	chr4:15869820-15869970	HCPEpiC	choroid plexus:	n/a	n/a
8	RAD21	chr4:15869749-15869971	SK-N-SH_RA	brain:	n/a	n/a
9	CTCF	chr4:15869800-15869950	Hela-S3	cervix:	n/a	n/a
10	CTCF	chr4:15869820-15869970	GM12871	blood:	n/a	n/a
11	RAD21	chr4:15869735-15870054	H1-hESC	embryonic stem cell:	n/a	n/a
12	JUND	chr4:15869811-15869988	K562	blood:	n/a	n/a
13	CTCF	chr4:15869770-15870038	H1-hESC	embryonic stem cell:	n/a	n/a
14	CTCF	chr4:15869780-15869930	HEEpiC	esophagus:	n/a	n/a
15	CTCF	chr4:15869759-15870053	K562	blood:	n/a	n/a
16	CTCF	chr4:15869780-15869930	HBMEC	blood vessel:	n/a	n/a
17	SMC3	chr4:15869780-15870061	Hela-S3	cervix:	n/a	n/a
18	CTCF	chr4:15869780-15869930	HEK293	kidney:	n/a	n/a
19	CTCF	chr4:15869780-15869930	BE2_C	brain:	n/a	n/a
20	CTCF	chr4:15869826-15869957	A549	lung:	n/a	n/a
21	CTCF	chr4:15869760-15869910	HMEC	breast:	n/a	n/a
22	RAD21	chr4:15869779-15869988	SK-N-SH_RA	brain:	n/a	n/a
23	RAD21	chr4:15869762-15870090	H1-hESC	embryonic stem cell:	n/a	n/a
24	CTCF	chr4:15869797-15869967	K562	blood:	n/a	n/a
25	CTCF	chr4:15869800-15869950	AG09319	gingival:	n/a	n/a
26	CTCF	chr4:15869757-15869930	A549	lung:	n/a	n/a
27	ZNF384	chr4:15869705-15870062	K562	blood:	n/a	n/a
28	CTCF	chr4:15869790-15869997	NHEK	skin:	n/a	n/a
29	CTCF	chr4:15869800-15869982	Hela-S3	cervix:	n/a	n/a
30	RAD21	chr4:15869714-15870119	ECC-1	luminal epithelium:	n/a	n/a
31	RAD21	chr4:15869780-15870147	A549	lung:	n/a	n/a
32	RAD21	chr4:15869763-15869992	ECC-1	luminal epithelium:	n/a	n/a
33	RAD21	chr4:15869732-15870171	A549	lung:	n/a	n/a
34	RAD21	chr4:15869727-15870097	H1-hESC	embryonic stem cell:	n/a	n/a
35	CTCF	chr4:15869780-15869930	NHEK	skin:	n/a	n/a
36	CTCF	chr4:15869808-15869956	Gliobla	brain:	n/a	n/a

No data

(count:1 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:15869463..15870168-chr4:15957576..15958464,2	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000251644	TF binding region

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs1003560	0.83[AMR][1000 genomes]
rs1010369	0.83[AMR][1000 genomes]
rs2079682	0.83[AMR][1000 genomes]
rs2531168	0.83[AMR][1000 genomes]
rs2531171	0.83[AMR][1000 genomes]
rs2532096	0.83[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1012988	chr4:15597510-16091527	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
2	nsv916742	chr4:15797994-16064232	Strong transcription Enhancers Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Genic enhancers Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
3	nsv878714	chr4:15840839-15895791	Enhancers Active TSS Flanking Bivalent TSS/Enh Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	1 gene(s)	inside rSNPs	diseases
4	nsv878715	chr4:15840839-15947493	Enhancers Weak transcription Bivalent Enhancer Strong transcription Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
5	esv3440132	chr4:15868479-15871027	Weak transcription Enhancers	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	esv3373698	chr4:15868504-15870802	Weak transcription Enhancers	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
7	esv3337844	chr4:15869004-15870402	Enhancers Weak transcription	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:15867200-15870400	Weak transcription	Stomach Smooth Muscle	stomach
2	chr4:15868800-15870600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
3	chr4:15869800-15870800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
4	chr4:15869800-15871000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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