Variant report

Variant	rs3912662
Chromosome Location	chr11:92595671-92595672
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs10830951	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12277422	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs12294687	0.92[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1552511	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1043861	chr11:92357570-92689868	Strong transcription Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
2	nsv1044571	chr11:92495213-92742314	Enhancers Flanking Bivalent TSS/Enh Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:92578200-92598600	Weak transcription	Fetal Brain Male	brain
2	chr11:92585600-92603000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
3	chr11:92586800-92615800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr11:92587400-92615800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
5	chr11:92589400-92602400	Weak transcription	Fetal Thymus	thymus
6	chr11:92590000-92597600	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
7	chr11:92590200-92598000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr11:92590400-92615800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
9	chr11:92591000-92602200	Weak transcription	H9 Cell Line	embryonic stem cell
10	chr11:92591600-92595800	Enhancers	Colon Smooth Muscle	Colon
11	chr11:92592800-92600000	Weak transcription	Fetal Brain Female	brain
12	chr11:92593000-92598200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
13	chr11:92593000-92600200	Weak transcription	Aorta	Aorta
14	chr11:92593400-92601200	Weak transcription	Brain Anterior Caudate	brain
15	chr11:92593600-92596800	Weak transcription	Cortex derived primary cultured neurospheres	brain
16	chr11:92593800-92615400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
17	chr11:92594000-92598000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
18	chr11:92594000-92598600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
19	chr11:92594400-92595800	Enhancers	Pancreatic Islets	Pancreatic Islet
20	chr11:92594400-92605400	Weak transcription	Fetal Muscle Leg	muscle
21	chr11:92595000-92599200	Weak transcription	Fetal Heart	heart
22	chr11:92595000-92600600	Weak transcription	Rectal Smooth Muscle	rectum
23	chr11:92595200-92598600	Weak transcription	Fetal Stomach	stomach
24	chr11:92595400-92597400	Weak transcription	Fetal Lung	lung
25	chr11:92595600-92597800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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