Variant report
| Variant | rs3912976 |
|---|---|
| Chromosome Location | chr12:75028026-75028027 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr12:74931443..74933195-chr12:75027637..75029931,2 | MCF-7 | breast: |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000253719 | Chromatin interaction |
| ENSG00000257386 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:37)
| rs_ID | r2[population] |
|---|---|
| rs1157081 | 0.96[EUR][1000 genomes] |
| rs11832914 | 1.00[ASN][1000 genomes] |
| rs11836744 | 1.00[ASN][1000 genomes] |
| rs12814597 | 1.00[ASN][1000 genomes] |
| rs12816124 | 1.00[ASN][1000 genomes] |
| rs12818780 | 1.00[ASN][1000 genomes] |
| rs12832355 | 1.00[ASN][1000 genomes] |
| rs1493813 | 0.97[EUR][1000 genomes] |
| rs1493820 | 1.00[ASN][1000 genomes] |
| rs17113865 | 1.00[ASN][1000 genomes] |
| rs17113909 | 1.00[ASN][1000 genomes] |
| rs17113938 | 1.00[ASN][1000 genomes] |
| rs1972018 | 1.00[ASN][1000 genomes] |
| rs1994886 | 0.97[EUR][1000 genomes] |
| rs2131714 | 0.97[EUR][1000 genomes] |
| rs2131715 | 0.97[EUR][1000 genomes] |
| rs2131716 | 0.97[EUR][1000 genomes] |
| rs2172600 | 0.89[AFR][1000 genomes];0.97[EUR][1000 genomes] |
| rs2605353 | 0.95[EUR][1000 genomes] |
| rs2605354 | 0.95[EUR][1000 genomes] |
| rs2605356 | 0.97[EUR][1000 genomes] |
| rs2605357 | 0.97[EUR][1000 genomes] |
| rs2605359 | 0.85[AFR][1000 genomes];0.96[EUR][1000 genomes] |
| rs2641455 | 0.97[EUR][1000 genomes] |
| rs2661709 | 0.97[EUR][1000 genomes] |
| rs2661710 | 0.97[EUR][1000 genomes] |
| rs2661716 | 0.91[EUR][1000 genomes] |
| rs34441990 | 0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs3905798 | 1.00[ASN][1000 genomes] |
| rs4882647 | 0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs59679678 | 1.00[ASN][1000 genomes] |
| rs71458192 | 1.00[ASN][1000 genomes] |
| rs7961062 | 0.94[AFR][1000 genomes];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs7976081 | 1.00[ASN][1000 genomes] |
| rs903167 | 0.97[EUR][1000 genomes] |
| rs903168 | 0.97[EUR][1000 genomes] |
| rs996431 | 0.97[EUR][1000 genomes] |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
