Variant report

Variant	rs3915504
Chromosome Location	chr3:59995866-59995867
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs3915503	0.82[CEU][hapmap];0.92[MEX][hapmap];0.81[TSI][hapmap];0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs4679627	0.81[ASN][1000 genomes]
rs809098	0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv428085	chr3:59782509-60070116	Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Active TSS Genic enhancers ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv1014983	chr3:59884024-60558331	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv590387	chr3:59890976-60481459	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv876838	chr3:59952152-59999690	Enhancers Flanking Active TSS Active TSS Weak transcription Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	nsv590388	chr3:59957252-60018326	Weak transcription Genic enhancers Flanking Active TSS Enhancers Strong transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
6	nsv590389	chr3:59981525-59998389	Weak transcription Flanking Active TSS Enhancers Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3'	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:31 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:59992600-59996200	Enhancers	Primary hematopoietic stem cells short term culture	blood
2	chr3:59992800-59996600	Flanking Active TSS	Primary T helper naive cells fromperipheralblood	blood
3	chr3:59993000-59997200	Flanking Active TSS	Primary T cells from cord blood	blood
4	chr3:59993600-59996400	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
5	chr3:59994200-59996000	Genic enhancers	Dnd41	blood
6	chr3:59994800-59996000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
7	chr3:59994800-59996200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
8	chr3:59995000-59997200	Enhancers	iPS-20b Cell Line	embryonic stem cell
9	chr3:59995200-59996400	Flanking Active TSS	Primary T killer memory cells from peripheral blood	blood
10	chr3:59995200-59996400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
11	chr3:59995200-59996600	Flanking Active TSS	Primary T killer naive cells fromperipheralblood	blood
12	chr3:59995200-59997000	Enhancers	iPS-18 Cell Line	embryonic stem cell
13	chr3:59995200-59997200	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
14	chr3:59995200-59997200	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
15	chr3:59995200-59997600	Flanking Active TSS	Primary T helper naive cells from peripheral blood	blood
16	chr3:59995400-59996200	Enhancers	Cortex derived primary cultured neurospheres	brain
17	chr3:59995600-59996200	Enhancers	Primary hematopoietic stem cells	blood
18	chr3:59995600-59996400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
19	chr3:59995600-59996400	Enhancers	Primary B cells from cord blood	blood
20	chr3:59995600-59996600	Flanking Active TSS	Primary T helper memory cells from peripheral blood 1	blood
21	chr3:59995600-59996600	Flanking Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
22	chr3:59995600-59996800	Enhancers	HUES64 Cell Line	embryonic stem cell
23	chr3:59995600-59997200	Flanking Active TSS	Primary T regulatory cells fromperipheralblood	blood
24	chr3:59995600-59998800	Weak transcription	Pancreatic Islets	Pancreatic Islet
25	chr3:59995800-59996000	Enhancers	Primary T cells fromperipheralblood	blood
26	chr3:59995800-59996000	Enhancers	Thymus	Thymus
27	chr3:59995800-59996400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
28	chr3:59995800-59996400	Flanking Active TSS	Fetal Thymus	thymus
29	chr3:59995800-59996600	Enhancers	Primary B cells from peripheral blood	blood
30	chr3:59995800-59996600	Flanking Active TSS	Primary T helper memory cells from peripheral blood 2	blood
31	chr3:59995800-59997000	Enhancers	HUES48 Cell Line	embryonic stem cell

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