Variant report

Variant	rs3917658
Chromosome Location	chr1:169598530-169598531
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs28565131	1.00[AMR][1000 genomes]
rs3917648	1.00[AFR][1000 genomes]
rs3917772	1.00[AMR][1000 genomes]
rs3917812	1.00[AMR][1000 genomes]
rs3917814	1.00[AMR][1000 genomes]
rs59251103	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv10418	chr1:169059628-169621268	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Strong transcription ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	56 gene(s)	inside rSNPs	diseases
2	nsv532586	chr1:169593222-169713184	Weak transcription Transcr. at gene 5' and 3' Strong transcription Enhancers Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:169591600-169599600	Enhancers	Primary T helper cells PMA-I stimulated	--
2	chr1:169592200-169599400	Enhancers	Primary T killer naive cells fromperipheralblood	blood
3	chr1:169592200-169599600	Enhancers	Primary T helper cells fromperipheralblood	blood
4	chr1:169592200-169599800	Enhancers	Primary T helper naive cells fromperipheralblood	blood
5	chr1:169594400-169599400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
6	chr1:169594600-169599000	Weak transcription	HUVEC	blood vessel
7	chr1:169596800-169599600	Enhancers	Primary T helper naive cells from peripheral blood	blood
8	chr1:169597000-169598600	Enhancers	Primary hematopoietic stem cells	blood
9	chr1:169597200-169599600	Enhancers	Primary hematopoietic stem cells short term culture	blood
10	chr1:169597400-169598600	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
11	chr1:169597400-169598800	Enhancers	Primary monocytes fromperipheralblood	blood
12	chr1:169598000-169600600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
13	chr1:169598200-169599800	Enhancers	Primary T cells from cord blood	blood
14	chr1:169598400-169599200	Weak transcription	Primary T cells fromperipheralblood	blood
15	chr1:169598400-169599200	Weak transcription	Fetal Thymus	thymus
16	chr1:169598400-169602200	Weak transcription	Dnd41	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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