Variant report

Variant	rs3917727
Chromosome Location	chr1:169581258-169581259
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs2236868	0.93[ASW][hapmap]
rs3917651	1.00[CHB][hapmap]
rs3917714	1.00[CHB][hapmap]
rs3917715	1.00[CHB][hapmap]
rs3917717	1.00[CHB][hapmap]
rs3917721	1.00[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv10418	chr1:169059628-169621268	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Strong transcription ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	56 gene(s)	inside rSNPs	diseases
2	nsv517483	chr1:169576568-169581258	Enhancers Weak transcription Strong transcription Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs3917727	SELL	cis	parietal	SCAN
rs3917727	F5	cis	parietal	SCAN

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:169565400-169581400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr1:169570400-169585400	Enhancers	Primary monocytes fromperipheralblood	blood
3	chr1:169574800-169583000	Enhancers	Primary neutrophils fromperipheralblood	blood
4	chr1:169576600-169585200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
5	chr1:169578800-169584200	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
6	chr1:169579400-169581400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
7	chr1:169579600-169582000	Weak transcription	Primary T cells from cord blood	blood
8	chr1:169579800-169587600	Weak transcription	Primary T helper cells PMA-I stimulated	--
9	chr1:169580200-169584200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
10	chr1:169580600-169582000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
11	chr1:169581000-169581400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
12	chr1:169581000-169583600	Enhancers	Monocytes-CD14+_RO01746	blood
13	chr1:169581000-169585400	Weak transcription	Placenta	Placenta

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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