Variant report

Variant	rs3917778
Chromosome Location	chr1:169570901-169570902
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr1:169569836..169571238-chr1:169680901..169681521,6	MCF-7	breast:
2	chr1:169570131..169571022-chr1:169778321..169779364,5	MCF-7	breast:
3	chr1:169570098..169571225-chr1:169663167..169664353,5	MCF-7	breast:
4	chr1:169562439..169565344-chr1:169568413..169571209,3	K562	blood:

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs3917743	1.00[AFR][1000 genomes]
rs3917746	1.00[AFR][1000 genomes]
rs3917758	1.00[AFR][1000 genomes]
rs3917798	1.00[AFR][1000 genomes]
rs3917801	1.00[AFR][1000 genomes]
rs73039436	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv10418	chr1:169059628-169621268	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Strong transcription ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	56 gene(s)	inside rSNPs	diseases
2	nsv872538	chr1:169567516-169576207	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
3	esv2762197	chr1:169568646-169572345	Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:169565400-169581400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr1:169569800-169576400	Enhancers	Primary T helper naive cells fromperipheralblood	blood
3	chr1:169570000-169571800	Enhancers	Primary T cells from cord blood	blood
4	chr1:169570000-169574400	Enhancers	Primary T killer naive cells fromperipheralblood	blood
5	chr1:169570200-169573200	Enhancers	Primary T regulatory cells fromperipheralblood	blood
6	chr1:169570200-169573800	Enhancers	Dnd41	blood
7	chr1:169570200-169575200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
8	chr1:169570200-169575400	Enhancers	Primary B cells from peripheral blood	blood
9	chr1:169570200-169576400	Enhancers	Primary T helper cells fromperipheralblood	blood
10	chr1:169570400-169571600	Enhancers	GM12878-XiMat	blood
11	chr1:169570400-169571600	Enhancers	Monocytes-CD14+_RO01746	blood
12	chr1:169570400-169572200	Enhancers	Primary neutrophils fromperipheralblood	blood
13	chr1:169570400-169573800	Enhancers	Primary T helper naive cells from peripheral blood	blood
14	chr1:169570400-169573800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
15	chr1:169570400-169574000	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
16	chr1:169570400-169574200	Enhancers	Primary T cells fromperipheralblood	blood
17	chr1:169570400-169574200	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
18	chr1:169570400-169574400	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
19	chr1:169570400-169576600	Enhancers	Primary T killer memory cells from peripheral blood	blood
20	chr1:169570400-169585400	Enhancers	Primary monocytes fromperipheralblood	blood
21	chr1:169570600-169571600	Enhancers	Primary hematopoietic stem cells short term culture	blood
22	chr1:169570600-169571600	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
23	chr1:169570600-169573000	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
24	chr1:169570600-169573200	Enhancers	Primary hematopoietic stem cells	blood
25	chr1:169570600-169573800	Enhancers	Primary B cells from cord blood	blood
26	chr1:169570800-169571800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
27	chr1:169570800-169572800	Enhancers	Primary mononuclear cells fromperipheralblood	Blood

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