Variant report

Variant	rs3917856
Chromosome Location	chr1:169558512-169558513
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	STAT3	chr1:169558297-169558777	MCF10A-Er-Src	breast:	n/a	n/a
2	FOS	chr1:169558265-169558696	MCF10A-Er-Src	breast:	n/a	n/a
3	STAT3	chr1:169558284-169558873	MCF10A-Er-Src	breast:	n/a	n/a
4	FOS	chr1:169558308-169558686	MCF10A-Er-Src	breast:	n/a	n/a
5	STAT3	chr1:169558289-169558705	MCF10A-Er-Src	breast:	n/a	n/a
6	MYC	chr1:169558407-169558584	MCF10A-Er-Src	breast:	n/a	n/a
7	FOS	chr1:169558287-169558704	MCF10A-Er-Src	breast:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:169555910..169558714-chr1:169805893..169807663,2	K562	blood:

Variant related genes	Relation type
F5	TF binding region

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs3917774	0.94[AFR][1000 genomes]
rs3917799	0.94[AFR][1000 genomes]
rs3917805	0.94[AFR][1000 genomes]
rs3917813	0.94[AFR][1000 genomes]
rs3917826	1.00[AMR][1000 genomes]
rs3917828	0.94[AFR][1000 genomes]
rs3917830	0.94[AFR][1000 genomes]
rs3917834	1.00[AMR][1000 genomes]
rs3917838	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv10418	chr1:169059628-169621268	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Strong transcription ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	56 gene(s)	inside rSNPs	diseases
2	nsv548187	chr1:169530837-169559035	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
3	nsv872534	chr1:169533266-169561274	Enhancers Weak transcription Bivalent/Poised TSS Bivalent Enhancer Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:169555800-169558800	Enhancers	Primary T cells from cord blood	blood
2	chr1:169556200-169558800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
3	chr1:169556200-169559200	Enhancers	Primary T helper cells fromperipheralblood	blood
4	chr1:169556400-169558600	Enhancers	Liver	Liver
5	chr1:169556400-169558800	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
6	chr1:169556400-169562000	Weak transcription	GM12878-XiMat	blood
7	chr1:169556600-169558600	Enhancers	HepG2	liver
8	chr1:169557400-169558800	Enhancers	Primary T helper naive cells fromperipheralblood	blood
9	chr1:169557400-169558800	Enhancers	Primary T killer memory cells from peripheral blood	blood
10	chr1:169557800-169558600	Enhancers	Primary T regulatory cells fromperipheralblood	blood
11	chr1:169557800-169558800	Enhancers	Primary T helper naive cells from peripheral blood	blood
12	chr1:169558000-169558600	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
13	chr1:169558000-169558600	Enhancers	Primary T killer naive cells fromperipheralblood	blood
14	chr1:169558000-169558800	Enhancers	Primary T cells fromperipheralblood	blood
15	chr1:169558000-169558800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
16	chr1:169558000-169558800	Enhancers	Dnd41	blood
17	chr1:169558000-169559200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
18	chr1:169558200-169558600	Enhancers	Primary hematopoietic stem cells short term culture	blood
19	chr1:169558200-169558800	Enhancers	Primary hematopoietic stem cells	blood
20	chr1:169558400-169559200	Enhancers	Primary T helper cells PMA-I stimulated	--
21	chr1:169558400-169559200	Enhancers	Primary T helper 17 cells PMA-I stimulated	--

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