Variant report

Variant	rs392084
Chromosome Location	chr6:79057427-79057428
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10455345	0.95[ASN][1000 genomes]
rs12213776	0.90[ASN][1000 genomes]
rs1349662	0.84[EUR][1000 genomes]
rs1452531	0.84[EUR][1000 genomes]
rs1452535	0.90[ASN][1000 genomes]
rs1584756	0.88[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2262380	0.86[EUR][1000 genomes]
rs2321307	0.88[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs235454	0.90[EUR][1000 genomes]
rs235455	0.90[EUR][1000 genomes]
rs235457	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs236246	0.91[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs236248	0.91[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs236250	0.83[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs236251	0.89[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs236252	0.91[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs236253	0.82[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs236260	0.80[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs236261	0.88[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs2444202	0.82[EUR][1000 genomes]
rs2493224	0.88[EUR][1000 genomes]
rs2493228	0.88[EUR][1000 genomes]
rs2493229	0.86[EUR][1000 genomes]
rs2493237	0.84[EUR][1000 genomes]
rs72894264	0.95[ASN][1000 genomes]
rs9448389	0.95[ASN][1000 genomes]
rs9448394	0.88[AMR][1000 genomes];0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2758064	chr6:78795880-79193468	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
2	esv2759447	chr6:78795880-79193468	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv886235	chr6:78861808-79369972	Enhancers Active TSS Weak transcription ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv1027066	chr6:78884336-79073481	Enhancers ZNF genes & repeats Bivalent Enhancer Weak transcription Active TSS Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv428149	chr6:78890476-79099763	Enhancers Bivalent Enhancer ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
6	nsv830704	chr6:78890482-79059657	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
7	esv2757181	chr6:78944539-79094007	Enhancers Weak transcription ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
8	nsv1017407	chr6:78971769-79059907	Enhancers Weak transcription ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
9	nsv821650	chr6:79002204-79095287	Enhancers Weak transcription ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
10	nsv1018006	chr6:79003806-79228498	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
11	nsv604011	chr6:79042990-79455282	Enhancers Active TSS Flanking Active TSS Weak transcription Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:79056600-79057600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
2	chr6:79057200-79059600	Weak transcription	HUES48 Cell Line	embryonic stem cell

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