Variant report

Variant	rs3922584
Chromosome Location	chr5:112455099-112455100
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs11953203	0.80[CEU][hapmap]
rs13156718	0.84[CEU][hapmap]
rs1443693	0.91[CEU][hapmap]
rs3884576	0.87[EUR][1000 genomes]
rs3922563	0.96[CEU][hapmap];0.87[EUR][1000 genomes]
rs3922583	0.96[CEU][hapmap];0.87[EUR][1000 genomes]
rs3922585	0.84[CEU][hapmap]
rs4078252	0.96[CEU][hapmap]
rs4078253	0.96[CEU][hapmap];0.85[EUR][1000 genomes]
rs4078254	0.96[CEU][hapmap];0.85[EUR][1000 genomes]
rs4235793	0.84[EUR][1000 genomes]
rs4262097	0.85[EUR][1000 genomes]
rs4705543	0.87[CEU][hapmap]
rs4705544	0.96[CEU][hapmap];0.85[EUR][1000 genomes]
rs4705545	0.83[EUR][1000 genomes]
rs4705780	0.96[CEU][hapmap];0.84[EUR][1000 genomes]
rs4705783	0.91[CEU][hapmap]
rs4705787	0.84[EUR][1000 genomes]
rs4705788	0.84[EUR][1000 genomes]
rs6594683	0.96[CEU][hapmap];0.85[EUR][1000 genomes]
rs6594687	0.91[CEU][hapmap]
rs6859963	0.84[EUR][1000 genomes]
rs6883605	0.81[CEU][hapmap]
rs7702177	0.92[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1018344	chr5:112390951-112458853	Enhancers Weak transcription Bivalent Enhancer Strong transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv599396	chr5:112408944-112853189	Weak transcription Active TSS Enhancers Flanking Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:70 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:112431200-112461600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
2	chr5:112434000-112459200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr5:112448800-112455200	Weak transcription	HUVEC	blood vessel
4	chr5:112450000-112459200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
5	chr5:112451000-112460600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr5:112451000-112478800	Weak transcription	Aorta	Aorta
7	chr5:112451800-112456200	Enhancers	Ovary	ovary
8	chr5:112452600-112455400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
9	chr5:112452600-112455600	Enhancers	Fetal Lung	lung
10	chr5:112452600-112456800	Enhancers	Fetal Stomach	stomach
11	chr5:112452800-112455200	Genic enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
12	chr5:112452800-112456000	Enhancers	Fetal Muscle Leg	muscle
13	chr5:112452800-112456200	Enhancers	Cortex derived primary cultured neurospheres	brain
14	chr5:112452800-112456200	Enhancers	Right Ventricle	heart
15	chr5:112452800-112457200	Enhancers	Left Ventricle	heart
16	chr5:112453000-112456200	Enhancers	Duodenum Smooth Muscle	Duodenum
17	chr5:112453400-112455200	Enhancers	Brain Anterior Caudate	brain
18	chr5:112453400-112455200	Enhancers	Brain Germinal Matrix	brain
19	chr5:112453400-112456200	Enhancers	Skeletal Muscle Female	skeletal muscle
20	chr5:112453600-112455200	Enhancers	Fetal Brain Female	brain
21	chr5:112453600-112455600	Enhancers	Adipose Nuclei	Adipose
22	chr5:112453600-112457200	Enhancers	Right Atrium	heart
23	chr5:112453800-112455200	Enhancers	Small Intestine	intestine
24	chr5:112453800-112455400	Enhancers	Stomach Smooth Muscle	stomach
25	chr5:112453800-112456000	Enhancers	HSMMtube	muscle
26	chr5:112453800-112461800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
27	chr5:112454000-112455200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
28	chr5:112454000-112455200	Weak transcription	NHEK	skin
29	chr5:112454000-112455800	Weak transcription	Pancreatic Islets	Pancreatic Islet
30	chr5:112454200-112455400	Enhancers	Colon Smooth Muscle	Colon
31	chr5:112454200-112455400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
32	chr5:112454200-112455600	Genic enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
33	chr5:112454200-112456000	Enhancers	Psoas Muscle	Psoas
34	chr5:112454200-112456200	Enhancers	Placenta	Placenta
35	chr5:112454200-112457600	Enhancers	Liver	Liver
36	chr5:112454400-112455400	Enhancers	Fetal Muscle Trunk	muscle
37	chr5:112454400-112456200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
38	chr5:112454400-112456200	Enhancers	Fetal Kidney	kidney
39	chr5:112454400-112456200	Enhancers	Skeletal Muscle Male	skeletal muscle
40	chr5:112454600-112455200	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
41	chr5:112454600-112455200	Enhancers	Gastric	stomach
42	chr5:112454600-112455200	Enhancers	Pancreas	Pancrea
43	chr5:112454600-112455200	Enhancers	Spleen	Spleen
44	chr5:112454600-112455400	Enhancers	Esophagus	oesophagus
45	chr5:112454600-112455400	Enhancers	NHLF	lung
46	chr5:112454600-112455600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
47	chr5:112454600-112455600	Genic enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
48	chr5:112454600-112455600	Enhancers	HSMM	muscle
49	chr5:112454600-112455800	Enhancers	Lung	lung
50	chr5:112454600-112456000	Enhancers	Stomach Mucosa	stomach

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