Variant report

Variant	rs3922780
Chromosome Location	chr3:111503756-111503757
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:111502318..111505166-chr3:111508502..111510647,2	K562	blood:

Extended variants
information (count: 64 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:63)

rs_ID	r²[population]
rs12494734	0.86[CEU][hapmap]
rs13317985	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs13321524	1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[YRI][hapmap];0.87[ASN][1000 genomes]
rs13322494	1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[YRI][hapmap];0.87[ASN][1000 genomes]
rs13325336	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1398753	0.85[CEU][hapmap]
rs1398754	0.85[CEU][hapmap]
rs28479130	0.83[ASN][1000 genomes]
rs28534728	0.87[ASN][1000 genomes]
rs28648833	0.87[ASN][1000 genomes]
rs28675079	1.00[ASN][1000 genomes]
rs3821919	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs3922704	0.85[YRI][hapmap]
rs3922706	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3922707	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4075549	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4276156	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs4390898	1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[YRI][hapmap];0.87[ASN][1000 genomes]
rs4414820	0.82[CEU][hapmap]
rs4516581	1.00[ASN][1000 genomes]
rs4542994	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4634085	1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[YRI][hapmap];0.87[ASN][1000 genomes]
rs4682313	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56052712	0.83[ASN][1000 genomes]
rs57902958	0.87[ASN][1000 genomes]
rs58124137	0.87[ASN][1000 genomes]
rs58663746	0.87[ASN][1000 genomes]
rs60867472	0.87[ASN][1000 genomes]
rs6438012	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs66651424	1.00[ASN][1000 genomes]
rs66786213	0.87[ASN][1000 genomes]
rs66856712	0.87[ASN][1000 genomes]
rs66975684	0.83[ASN][1000 genomes]
rs6762246	1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[YRI][hapmap];0.87[ASN][1000 genomes]
rs6762572	1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[YRI][hapmap];1.00[ASN][1000 genomes]
rs6778818	1.00[CHB][hapmap];0.86[YRI][hapmap];1.00[ASN][1000 genomes]
rs6782513	1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[YRI][hapmap];1.00[ASN][1000 genomes]
rs6787278	1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[YRI][hapmap];0.87[ASN][1000 genomes]
rs6789977	1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[YRI][hapmap];0.87[ASN][1000 genomes]
rs6790355	1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs6790521	1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[YRI][hapmap];0.87[ASN][1000 genomes]
rs6790612	1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[YRI][hapmap];0.87[ASN][1000 genomes]
rs6790825	1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[YRI][hapmap];0.87[ASN][1000 genomes]
rs6790977	1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[YRI][hapmap];0.87[ASN][1000 genomes]
rs6795947	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs67970120	1.00[ASN][1000 genomes]
rs6800047	1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[YRI][hapmap];0.87[ASN][1000 genomes]
rs6800065	0.84[YRI][hapmap];0.87[ASN][1000 genomes]
rs6800922	1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs6802960	1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[YRI][hapmap];0.87[ASN][1000 genomes]
rs73222475	0.87[ASN][1000 genomes]
rs73222477	0.83[ASN][1000 genomes]
rs73222500	0.87[ASN][1000 genomes]
rs7614433	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs7627909	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9842396	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs9843288	1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[YRI][hapmap];1.00[ASN][1000 genomes]
rs9858064	1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs9858228	1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs9862472	1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs9868898	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs9871034	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.95[AMR][1000 genomes];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9880633	1.00[CHB][hapmap];1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv829676	chr3:111464087-111619200	Genic enhancers Strong transcription Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:111487800-111521000	Weak transcription	Gastric	stomach
2	chr3:111496000-111514000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr3:111499000-111518800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr3:111499400-111504000	Enhancers	Liver	Liver
5	chr3:111500200-111504000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
6	chr3:111500200-111504000	Enhancers	NHDF-Ad	bronchial
7	chr3:111500800-111505000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr3:111501400-111504200	Enhancers	Adipose Nuclei	Adipose
9	chr3:111501400-111506200	Weak transcription	Right Atrium	heart
10	chr3:111501600-111513600	Weak transcription	Pancreas	Pancrea
11	chr3:111501600-111518800	Weak transcription	A549	lung
12	chr3:111501800-111505000	Weak transcription	Fetal Heart	heart
13	chr3:111502200-111504800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
14	chr3:111502200-111506800	Weak transcription	HepG2	liver
15	chr3:111502800-111504600	Weak transcription	Pancreatic Islets	Pancreatic Islet
16	chr3:111503000-111505000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
17	chr3:111503000-111506400	Weak transcription	Rectal Smooth Muscle	rectum
18	chr3:111503400-111508800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
19	chr3:111503400-111508800	Weak transcription	Left Ventricle	heart
20	chr3:111503600-111504200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin

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