Variant report

(count:2 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	SPI1	chr3:139398287-139398522	K562	blood:	n/a	n/a
2	SPI1	chr3:139398253-139398647	HL-60	blood:	n/a	n/a

No data

(count:1 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:139396870..139399383-chr3:139403869..139405785,2	K562	blood:

(count:3 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-NMNAT3-1	chr3:139397464-139399833	ENSG00000249979
2	lnc-NMNAT3-1	chr3:139397462-139401406	ENSG00000261763.1
3	lnc-NMNAT3-1	chr3:139397462-139399830	NONHSAT092386

No data

Variant related genes	Relation type
NMNAT3	TF binding region

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10804669	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10935343	0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11714276	0.88[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs11717254	0.91[ASN][1000 genomes]
rs11720063	0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11720212	0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11720232	0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12492528	0.95[AFR][1000 genomes];0.81[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12639448	0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs28451114	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3856688	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs3922621	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4234472	0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4361244	0.89[ASN][1000 genomes]
rs4683678	0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4683680	0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs55983509	0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs59525705	0.80[AMR][1000 genomes];0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs62270195	0.89[ASN][1000 genomes]
rs7633367	0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9784259	0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9790066	0.84[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1003154	chr3:139060841-139788752	ZNF genes & repeats Flanking Active TSS Strong transcription Enhancers Weak transcription Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
2	nsv536729	chr3:139060841-139788752	Active TSS Enhancers Strong transcription Weak transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
3	nsv916193	chr3:139187767-139821526	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
4	nsv530058	chr3:139243971-139814419	Weak transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:139397000-139406800	Weak transcription	Psoas Muscle	Psoas
2	chr3:139397200-139398600	Enhancers	Primary monocytes fromperipheralblood	blood
3	chr3:139397200-139398800	Enhancers	Primary hematopoietic stem cells short term culture	blood
4	chr3:139397400-139406000	Weak transcription	Skeletal Muscle Male	skeletal muscle
5	chr3:139397600-139398600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
6	chr3:139398400-139398600	Enhancers	ES-I3 Cell Line	embryonic stem cell

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