Variant report
| Variant | rs3923551 |
|---|---|
| Chromosome Location | chr11:18857094-18857095 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:23)
| rs_ID | r2[population] |
|---|---|
| rs10832995 | 0.81[AMR][1000 genomes] |
| rs10832996 | 0.81[AMR][1000 genomes] |
| rs10832997 | 0.81[AMR][1000 genomes] |
| rs10832998 | 0.81[AMR][1000 genomes] |
| rs10832999 | 0.81[AMR][1000 genomes] |
| rs12385800 | 1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs12421038 | 1.00[ASN][1000 genomes] |
| rs12421782 | 0.80[AMR][1000 genomes] |
| rs34403467 | 0.97[ASN][1000 genomes] |
| rs34544706 | 0.98[ASN][1000 genomes] |
| rs3923552 | 0.80[AMR][1000 genomes] |
| rs3923553 | 0.81[AMR][1000 genomes] |
| rs4356204 | 0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs4421720 | 0.80[AMR][1000 genomes] |
| rs4433546 | 0.97[ASN][1000 genomes] |
| rs4628653 | 0.97[ASN][1000 genomes] |
| rs61885216 | 0.91[ASN][1000 genomes] |
| rs61885259 | 1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs7115257 | 1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs7117503 | 0.97[ASN][1000 genomes] |
| rs7118402 | 1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs7131214 | 1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs72876539 | 1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv553633 | chr11:18311701-19058451 | Weak transcription Strong transcription Active TSS Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 144 gene(s) | inside rSNPs | diseases |
| 2 | esv2758257 | chr11:18818729-19082068 | Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 12 gene(s) | inside rSNPs | diseases |
| 3 | esv2759806 | chr11:18818729-19082068 | Bivalent Enhancer Flanking Active TSS Active TSS Weak transcription Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 12 gene(s) | inside rSNPs | diseases |
| 4 | nsv428250 | chr11:18818729-19082068 | Bivalent Enhancer Enhancers Weak transcription Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 12 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr11:18856800-18857800 | Weak transcription | Pancreas | Pancrea |
