Variant report

Variant	rs3924525
Chromosome Location	chr6:118427216-118427217
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs11754433	0.90[EUR][1000 genomes]
rs11756834	0.90[EUR][1000 genomes]
rs12662262	1.00[CEU][hapmap];1.00[CHB][hapmap];0.90[EUR][1000 genomes]
rs2152076	1.00[CEU][hapmap];1.00[CHB][hapmap];0.90[EUR][1000 genomes]
rs2501518	0.86[JPT][hapmap]
rs5005997	1.00[CEU][hapmap];0.94[CHB][hapmap];0.90[EUR][1000 genomes]
rs56388357	0.90[EUR][1000 genomes]
rs62423695	0.90[EUR][1000 genomes]
rs6910376	0.90[EUR][1000 genomes]
rs6940272	1.00[CEU][hapmap];0.94[CHB][hapmap];0.90[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530526	chr6:118027339-118718476	Weak transcription Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:118422600-118427800	Weak transcription	Brain Inferior Temporal Lobe	brain
2	chr6:118423400-118428000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr6:118424000-118430600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr6:118425400-118430400	Weak transcription	Cortex derived primary cultured neurospheres	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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