Variant report

Variant	rs3924533
Chromosome Location	chr7:103010852-103010853
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:103009562..103011311-chr7:103018091..103020895,2	K562	blood:
2	chr7:103010338..103013174-chr7:103051030..103053015,2	K562	blood:
3	chr7:5465182..5467574-chr7:103008452..103011279,2	MCF-7	breast:
4	chr7:102983013..102986509-chr7:103008284..103010898,3	MCF-7	breast:
5	chr7:103008741..103010911-chr7:104653909..104656854,2	MCF-7	breast:
6	chr7:103009870..103012490-chr7:103026042..103028521,2	K562	blood:
7	chr7:103002267..103005655-chr7:103007426..103011602,5	MCF-7	breast:

Variant related genes	Relation type
ENSG00000239569	Chromatin interaction
ENSG00000272953	Chromatin interaction
ENSG00000105821	Chromatin interaction
ENSG00000005483	Chromatin interaction
ENSG00000161057	Chromatin interaction

Extended variants
information (count: 3 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs7811224	0.80[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1030446	chr7:102932689-103221638	Enhancers Flanking Active TSS Active TSS Weak transcription Strong transcription Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
2	nsv491911	chr7:102967150-103403622	Flanking Bivalent TSS/Enh Enhancers Weak transcription Bivalent Enhancer Strong transcription Bivalent/Poised TSS Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:109 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:102989200-103011400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr7:102989200-103013200	Weak transcription	Stomach Mucosa	stomach
3	chr7:102989800-103021200	Weak transcription	Fetal Heart	heart
4	chr7:102990800-103011200	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
5	chr7:102991000-103011400	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
6	chr7:102991400-103011200	Strong transcription	Primary monocytes fromperipheralblood	blood
7	chr7:102991400-103011400	Strong transcription	Rectal Mucosa Donor 29	rectum
8	chr7:102991400-103011400	Strong transcription	Monocytes-CD14+_RO01746	blood
9	chr7:102991400-103011600	Strong transcription	Fetal Thymus	thymus
10	chr7:102991600-103011200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
11	chr7:102991600-103011200	Strong transcription	Muscle Satellite Cultured Cells	--
12	chr7:102991800-103011200	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
13	chr7:102992000-103011200	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
14	chr7:102992400-103011400	Strong transcription	Adipose Nuclei	Adipose
15	chr7:102992800-103011200	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
16	chr7:102993000-103011200	Strong transcription	Breast Myoepithelial Primary Cells	Breast
17	chr7:102994600-103011200	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
18	chr7:102995000-103011400	Strong transcription	Liver	Liver
19	chr7:102995600-103011000	Strong transcription	Left Ventricle	heart
20	chr7:102998800-103011200	Strong transcription	Primary T helper cells fromperipheralblood	blood
21	chr7:103000000-103011200	Strong transcription	Rectal Mucosa Donor 31	rectum
22	chr7:103000600-103011200	Strong transcription	Fetal Brain Female	brain
23	chr7:103002400-103011200	Strong transcription	Brain Germinal Matrix	brain
24	chr7:103005000-103014800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
25	chr7:103006400-103011200	Strong transcription	HSMM	muscle
26	chr7:103006600-103011400	Strong transcription	HMEC	breast
27	chr7:103006800-103011200	Strong transcription	GM12878-XiMat	blood
28	chr7:103008800-103012400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
29	chr7:103009000-103011400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
30	chr7:103009000-103011600	Weak transcription	Colon Smooth Muscle	Colon
31	chr7:103009000-103012000	Weak transcription	Primary B cells from cord blood	blood
32	chr7:103009000-103012600	Weak transcription	Brain Inferior Temporal Lobe	brain
33	chr7:103009000-103013000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
34	chr7:103009000-103013000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
35	chr7:103009000-103013000	Weak transcription	Brain Angular Gyrus	brain
36	chr7:103009000-103013400	Weak transcription	Ovary	ovary
37	chr7:103009000-103014800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
38	chr7:103009000-103014800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
39	chr7:103009000-103014800	Weak transcription	Aorta	Aorta
40	chr7:103009000-103014800	Weak transcription	Brain Cingulate Gyrus	brain
41	chr7:103009000-103014800	Weak transcription	Right Ventricle	heart
42	chr7:103009000-103014800	Weak transcription	A549	lung
43	chr7:103009000-103017200	Weak transcription	Fetal Brain Male	brain
44	chr7:103009000-103019400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
45	chr7:103009000-103021000	Weak transcription	Gastric	stomach
46	chr7:103009000-103021000	Weak transcription	Pancreas	Pancrea
47	chr7:103009000-103021200	Weak transcription	Fetal Lung	lung
48	chr7:103009000-103029200	Weak transcription	Spleen	Spleen
49	chr7:103009200-103011000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
50	chr7:103009200-103011000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived

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