Variant report

Variant	rs3925303
Chromosome Location	chr7:21836475-21836476
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10226044	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs10226098	0.80[AFR][1000 genomes]
rs10235795	0.96[YRI][hapmap]
rs10260607	0.85[YRI][hapmap]
rs10269472	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs10270774	0.82[YRI][hapmap];0.81[AFR][1000 genomes]
rs10276109	0.91[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10950875	0.81[ASW][hapmap];0.82[GIH][hapmap];0.81[MKK][hapmap]
rs10950876	0.85[CEU][hapmap]
rs11982250	0.90[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[YRI][hapmap];0.85[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12700304	0.81[CEU][hapmap]
rs13222674	0.85[CEU][hapmap]
rs13239032	0.80[CEU][hapmap]
rs3735522	0.88[AFR][1000 genomes]
rs6954331	0.85[CEU][hapmap]
rs7780026	0.86[CEU][hapmap];0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7781044	0.86[CEU][hapmap];0.90[TSI][hapmap];0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7788469	0.86[LWK][hapmap];0.96[YRI][hapmap];0.87[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1018133	chr7:21740118-22055283	Active TSS Enhancers Strong transcription Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
2	nsv830922	chr7:21793386-21964675	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Bivalent Enhancer Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region miRNA target site	3 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs3925303	C7orf30	cis	parietal	SCAN

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:21834400-21848600	Weak transcription	Cortex derived primary cultured neurospheres	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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