Variant report

Variant	rs3926960
Chromosome Location	chr2:148571041-148571042
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:148568641..148571230-chr2:148594216..148595772,2	MCF-7	breast:
2	chr2:148569573..148574536-chr2:148598832..148604000,7	MCF-7	breast:

Variant related genes	Relation type
ENSG00000121989	Chromatin interaction

Extended variants
information (count: 61 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:56)

rs_ID	r²[population]
rs1014064	0.81[EUR][1000 genomes]
rs10803523	0.82[EUR][1000 genomes]
rs11884013	0.83[AFR][1000 genomes];0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11889608	0.83[EUR][1000 genomes]
rs12053113	0.82[EUR][1000 genomes]
rs12464617	0.83[EUR][1000 genomes]
rs12472058	0.83[AFR][1000 genomes];0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12475399	0.82[AFR][1000 genomes];0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12479193	0.83[AFR][1000 genomes];0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12989596	0.80[EUR][1000 genomes]
rs12990959	0.84[AFR][1000 genomes];0.80[AMR][1000 genomes];0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12997065	0.82[EUR][1000 genomes]
rs13000597	0.82[EUR][1000 genomes]
rs13004451	0.81[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs13005423	0.83[AFR][1000 genomes];0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs13013743	0.83[EUR][1000 genomes]
rs13013867	0.83[EUR][1000 genomes]
rs13014904	0.83[AFR][1000 genomes];0.80[AMR][1000 genomes];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs13014926	0.85[EUR][1000 genomes]
rs13016083	0.83[EUR][1000 genomes]
rs13017754	0.83[EUR][1000 genomes]
rs13019386	0.83[EUR][1000 genomes]
rs13022319	0.81[EUR][1000 genomes]
rs13025219	0.85[EUR][1000 genomes]
rs13025589	0.83[EUR][1000 genomes]
rs13025701	0.83[AFR][1000 genomes];0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs13026220	0.83[EUR][1000 genomes]
rs13028411	0.83[EUR][1000 genomes]
rs13034561	0.83[EUR][1000 genomes]
rs1364658	0.80[EUR][1000 genomes]
rs1364660	0.81[EUR][1000 genomes]
rs1424944	0.83[EUR][1000 genomes]
rs1424946	0.83[EUR][1000 genomes]
rs1424949	0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1424954	0.82[EUR][1000 genomes]
rs16855486	0.83[EUR][1000 genomes]
rs1863152	0.83[AFR][1000 genomes];0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1863153	0.83[AFR][1000 genomes];0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1895693	0.82[EUR][1000 genomes]
rs1991169	0.83[AFR][1000 genomes];0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2161983	0.80[EUR][1000 genomes]
rs2161985	0.81[EUR][1000 genomes]
rs34005843	0.83[EUR][1000 genomes]
rs35370215	0.80[EUR][1000 genomes]
rs4972272	0.83[AFR][1000 genomes];0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4972316	0.83[EUR][1000 genomes]
rs4972356	0.83[EUR][1000 genomes]
rs4972357	0.81[EUR][1000 genomes]
rs6430241	0.83[AFR][1000 genomes];0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6430242	0.81[AFR][1000 genomes];0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6734998	0.83[AFR][1000 genomes];0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6760703	0.81[EUR][1000 genomes]
rs7600869	0.83[AFR][1000 genomes];0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs929939	0.82[EUR][1000 genomes]
rs9679427	0.81[AFR][1000 genomes];0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs987122	0.83[AFR][1000 genomes];0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv875275	chr2:148166428-148711242	Enhancers Weak transcription Flanking Active TSS Strong transcription Bivalent Enhancer Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
2	nsv916286	chr2:148438001-148977722	Enhancers Weak transcription Bivalent/Poised TSS Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
3	nsv529388	chr2:148471340-148934846	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
4	esv3392562	chr2:148476961-148843061	Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
5	nsv213175	chr2:148571039-148571046	Inactive region	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
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