Variant report

Variant	rs39300
Chromosome Location	chr7:21465133-21465134
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs253426	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs253427	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs253428	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs39288	0.80[AMR][1000 genomes]
rs39292	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs39293	0.81[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs39294	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs39296	0.96[EUR][1000 genomes]
rs39304	0.86[EUR][1000 genomes]
rs39758	0.93[EUR][1000 genomes]
rs60274229	0.86[EUR][1000 genomes]
rs7778625	0.80[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1027302	chr7:21391598-21727016	Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
2	nsv538800	chr7:21391598-21727016	Enhancers Genic enhancers Flanking Bivalent TSS/Enh Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription Flanking Active TSS Bivalent Enhancer Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	24 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:21458200-21466000	Weak transcription	Thymus	Thymus
2	chr7:21462200-21465600	Weak transcription	Fetal Thymus	thymus
3	chr7:21462200-21466000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
4	chr7:21463600-21465600	Weak transcription	K562	blood
5	chr7:21464600-21466000	Enhancers	HUES48 Cell Line	embryonic stem cell
6	chr7:21464800-21465800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
7	chr7:21465000-21465200	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
8	chr7:21465000-21465400	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
9	chr7:21465000-21466000	Enhancers	H1 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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