Variant report

Variant	rs3930263
Chromosome Location	chr21:15949933-15949934
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr21:15942194..15946580-chr21:15946989..15950349,5	K562	blood:
2	chr21:15949855..15953983-chr21:15956777..15961120,5	K562	blood:

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs1040341	0.85[ASN][1000 genomes]
rs10854319	0.82[CHB][hapmap];0.85[JPT][hapmap]
rs11909106	0.87[CHB][hapmap];0.84[JPT][hapmap]
rs12329657	0.81[CHB][hapmap];0.84[JPT][hapmap]
rs1882916	0.80[ASN][1000 genomes]
rs1882917	0.94[AFR][1000 genomes];0.81[AMR][1000 genomes];0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1974155	0.87[CHB][hapmap];0.94[JPT][hapmap];0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1980955	0.82[CHB][hapmap];0.85[JPT][hapmap]
rs2064024	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2064025	0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2205365	0.83[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs2205366	0.86[CHB][hapmap];0.94[JPT][hapmap];0.83[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs2223092	0.87[CHB][hapmap];0.84[JPT][hapmap]
rs2822761	0.81[CHB][hapmap];0.84[JPT][hapmap]
rs2822765	0.87[CHB][hapmap];0.84[JPT][hapmap]
rs2822767	0.87[CHB][hapmap];0.89[JPT][hapmap]
rs2822776	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2822777	1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3810580	0.88[CHB][hapmap];0.85[JPT][hapmap]
rs6516880	0.83[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs7275507	0.82[CHB][hapmap];0.85[JPT][hapmap]
rs7280293	0.82[CHB][hapmap];0.85[JPT][hapmap]
rs7282042	0.87[CHB][hapmap];0.94[JPT][hapmap];0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9980395	0.87[CHB][hapmap];0.84[JPT][hapmap]
rs9980490	0.87[CHB][hapmap];0.84[JPT][hapmap]
rs9983245	0.86[CHB][hapmap];0.84[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1059591	chr21:15835325-15969195	Weak transcription Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv1057934	chr21:15863224-15969195	Strong transcription Weak transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv834045	chr21:15900678-16112850	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
4	nsv834046	chr21:15903792-16077369	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
5	nsv470879	chr21:15946828-15964278	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr21:15949000-15952000	Weak transcription	K562	blood

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