Variant report

Variant	rs3932069
Chromosome Location	chr12:30724139-30724140
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs10506070	0.86[MEX][hapmap];1.00[TSI][hapmap]
rs12426381	0.88[AMR][1000 genomes]
rs1371050	0.85[AMR][1000 genomes]
rs1630788	0.85[AMR][1000 genomes]
rs1659286	0.85[AMR][1000 genomes]
rs794160	0.81[AMR][1000 genomes]
rs794162	0.81[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3343291	chr12:30455597-30992837	Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	48 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs3932069	IPO8	cis	multi-tissue	Pritchard

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:30721400-30724200	Weak transcription	Pancreas	Pancrea
2	chr12:30722200-30725600	Enhancers	Fetal Lung	lung
3	chr12:30723000-30725000	Enhancers	Fetal Stomach	stomach
4	chr12:30723600-30726800	Enhancers	Adipose Nuclei	Adipose
5	chr12:30723800-30724800	Enhancers	Stomach Smooth Muscle	stomach
6	chr12:30724000-30725400	Weak transcription	Liver	Liver

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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