Variant report

Variant	rs3932962
Chromosome Location	chr11:74979280-74979281
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:74970782..74974993-chr11:74977926..74981533,5	MCF-7	breast:

Variant related genes	Relation type
ENSG00000254429	Chromatin interaction

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs1783471	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2276310	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2279129	0.95[ASN][1000 genomes]
rs2279130	0.94[ASN][1000 genomes]
rs2282600	0.84[ASN][1000 genomes]
rs2510655	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2510656	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs35786880	0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1049887	chr11:74937977-75040438	Strong transcription Weak transcription Bivalent/Poised TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Active TSS Enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
2	nsv1036292	chr11:74937977-75059496	Weak transcription Genic enhancers Strong transcription Enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	65 gene(s)	inside rSNPs	diseases
3	nsv1041640	chr11:74945824-75174688	Flanking Active TSS Weak transcription Enhancers Bivalent/Poised TSS Genic enhancers Strong transcription Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	94 gene(s)	inside rSNPs	diseases
4	nsv832211	chr11:74945839-75106125	Flanking Active TSS Enhancers Active TSS Weak transcription Strong transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	66 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:97 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:74970800-74988200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr11:74972200-74984600	Weak transcription	Thymus	Thymus
3	chr11:74972400-75004400	Weak transcription	Fetal Brain Male	brain
4	chr11:74972600-74980600	Weak transcription	Brain Angular Gyrus	brain
5	chr11:74972600-74984600	Weak transcription	Fetal Thymus	thymus
6	chr11:74972800-74987200	Weak transcription	Skeletal Muscle Female	skeletal muscle
7	chr11:74972800-74991400	Weak transcription	Right Atrium	heart
8	chr11:74973200-74980800	Weak transcription	HSMMtube	muscle
9	chr11:74974000-74985000	Weak transcription	Cortex derived primary cultured neurospheres	brain
10	chr11:74975000-74980800	Strong transcription	Fetal Brain Female	brain
11	chr11:74975000-74983600	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
12	chr11:74975000-74986800	Weak transcription	HUES64 Cell Line	embryonic stem cell
13	chr11:74975000-74987600	Weak transcription	Small Intestine	intestine
14	chr11:74975200-74986600	Strong transcription	Fetal Intestine Small	intestine
15	chr11:74975200-74988200	Weak transcription	H9 Cell Line	embryonic stem cell
16	chr11:74975200-74988400	Weak transcription	Placenta Amnion	Placenta Amnion
17	chr11:74975200-74991200	Strong transcription	Fetal Stomach	stomach
18	chr11:74975600-74982000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
19	chr11:74975600-74982800	Strong transcription	Primary T cells from cord blood	blood
20	chr11:74975600-74984200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
21	chr11:74975600-74985400	Strong transcription	Fetal Intestine Large	intestine
22	chr11:74975600-74987400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
23	chr11:74975600-74988800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
24	chr11:74975600-74991400	Strong transcription	Breast Myoepithelial Primary Cells	Breast
25	chr11:74975600-74999000	Strong transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
26	chr11:74975800-74982000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
27	chr11:74975800-74982000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
28	chr11:74975800-74982000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
29	chr11:74975800-74983400	Weak transcription	HUVEC	blood vessel
30	chr11:74975800-74991200	Strong transcription	HUES6 Cell Line	embryonic stem cell
31	chr11:74976000-74982000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
32	chr11:74976000-74982200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
33	chr11:74976000-74982400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
34	chr11:74976200-74979600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
35	chr11:74976200-74983400	Strong transcription	Primary hematopoietic stem cells short term culture	blood
36	chr11:74976200-74985800	Strong transcription	Spleen	Spleen
37	chr11:74976200-74991800	Strong transcription	Lung	lung
38	chr11:74976400-74980200	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
39	chr11:74976400-74984600	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
40	chr11:74976400-74990200	Strong transcription	Fetal Muscle Trunk	muscle
41	chr11:74976600-74981200	Strong transcription	Gastric	stomach
42	chr11:74976600-74981200	Strong transcription	Ovary	ovary
43	chr11:74976600-74982600	Strong transcription	ES-I3 Cell Line	embryonic stem cell
44	chr11:74976600-74994200	Strong transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
45	chr11:74976800-74979400	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
46	chr11:74976800-74980200	Strong transcription	Pancreas	Pancrea
47	chr11:74976800-74980400	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
48	chr11:74976800-74981000	Strong transcription	Primary T helper cells fromperipheralblood	blood
49	chr11:74976800-74981400	Strong transcription	Duodenum Mucosa	Duodenum
50	chr11:74976800-74981400	Strong transcription	Sigmoid Colon	Sigmoid Colon

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