Variant report

Variant	rs39332
Chromosome Location	chr7:103451091-103451092
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs262334	1.00[JPT][hapmap]
rs262342	1.00[CHB][hapmap]
rs3819491	1.00[CHB][hapmap]
rs39336	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[YRI][hapmap];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs39337	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[YRI][hapmap];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs39338	0.83[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs39339	0.81[CEU][hapmap];1.00[CHB][hapmap];0.94[CHD][hapmap];1.00[JPT][hapmap];0.83[YRI][hapmap];0.80[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs39341	0.83[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[YRI][hapmap];0.80[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs39342	0.83[CEU][hapmap];0.80[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv427799	chr7:103250733-103454202	Enhancers Strong transcription Weak transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	esv1843940	chr7:103421702-103590285	Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:103446200-103452000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
2	chr7:103449200-103451200	Enhancers	HUES48 Cell Line	embryonic stem cell
3	chr7:103449200-103451200	Enhancers	HUES6 Cell Line	embryonic stem cell
4	chr7:103449200-103451200	Enhancers	iPS-15b Cell Line	embryonic stem cell
5	chr7:103449200-103451200	Enhancers	iPS-18 Cell Line	embryonic stem cell
6	chr7:103449800-103451200	Enhancers	H1 Cell Line	embryonic stem cell
7	chr7:103450000-103452200	Enhancers	Liver	Liver
8	chr7:103450200-103451600	Flanking Active TSS	K562	blood
9	chr7:103450200-103452800	Enhancers	Fetal Kidney	kidney
10	chr7:103450400-103451200	Flanking Active TSS	HepG2	liver
11	chr7:103450600-103451200	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
12	chr7:103450600-103452400	Enhancers	Primary T helper naive cells from peripheral blood	blood
13	chr7:103450800-103456600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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