The 2.0 version of rSNPBase

Variant report

Variant rs3933800
Chromosome Location chr9:5955695-5955696
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:74 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr9:5923000-5969000 Weak transcription Fetal Stomach stomach
2 chr9:5923200-5968200 Weak transcription Fetal Muscle Leg muscle
3 chr9:5923200-5971800 Weak transcription NHEK skin
4 chr9:5923200-5972400 Weak transcription Aorta Aorta
5 chr9:5924600-5967400 Weak transcription Brain Anterior Caudate brain
6 chr9:5924600-5968600 Weak transcription Cortex derived primary cultured neurospheres brain
7 chr9:5924600-5977000 Weak transcription Rectal Mucosa Donor 31 rectum
8 chr9:5924600-5977000 Weak transcription Sigmoid Colon Sigmoid Colon
9 chr9:5924800-5967600 Weak transcription Primary T cells fromperipheralblood blood
10 chr9:5925200-5968400 Weak transcription Fetal Muscle Trunk muscle
11 chr9:5926800-5972600 Weak transcription Fetal Intestine Small intestine
12 chr9:5933600-5968400 Weak transcription Fetal Intestine Large intestine
13 chr9:5934000-5956200 Weak transcription Primary B cells from cord blood blood
14 chr9:5934000-5965800 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
15 chr9:5934000-5967200 Weak transcription Breast Myoepithelial Primary Cells Breast
16 chr9:5934000-5967600 Weak transcription Placenta Placenta
17 chr9:5934000-5968400 Weak transcription Left Ventricle heart
18 chr9:5934200-5967600 Weak transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
19 chr9:5940000-6006800 Weak transcription Gastric stomach
20 chr9:5940200-5973800 Weak transcription Brain Inferior Temporal Lobe brain
21 chr9:5948000-6006000 Weak transcription Right Ventricle heart
22 chr9:5948200-5976800 Weak transcription Brain Cingulate Gyrus brain
23 chr9:5948400-5968400 Weak transcription Fetal Adrenal Gland Adrenal Gland
24 chr9:5948400-5968800 Weak transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
25 chr9:5949000-5968000 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin
26 chr9:5949400-5956600 Weak transcription Primary Natural Killer cells fromperipheralblood blood
27 chr9:5949400-5967200 Weak transcription Fetal Thymus thymus
28 chr9:5949400-5968600 Weak transcription Primary mononuclear cells fromperipheralblood Blood
29 chr9:5949600-5958400 Weak transcription Primary B cells from peripheral blood blood
30 chr9:5949600-5967400 Weak transcription Primary hematopoietic stem cells blood
31 chr9:5949600-5967400 Weak transcription Adipose Nuclei Adipose
32 chr9:5949600-5968600 Weak transcription HSMM muscle
33 chr9:5949600-5968800 Weak transcription Foreskin Fibroblast Primary Cells skin01 Skin
34 chr9:5949600-5969000 Weak transcription Primary T killer naive cells fromperipheralblood blood
35 chr9:5949600-5976400 Weak transcription Fetal Heart heart
36 chr9:5949800-5965000 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Female --
37 chr9:5949800-5965600 Weak transcription Primary T regulatory cells fromperipheralblood blood
38 chr9:5949800-5965800 Weak transcription H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
39 chr9:5949800-5967200 Weak transcription Primary T helper cells fromperipheralblood blood
40 chr9:5949800-5967200 Weak transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
41 chr9:5949800-5967200 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Male --
42 chr9:5949800-5967600 Weak transcription Primary neutrophils fromperipheralblood blood
43 chr9:5949800-5976800 Weak transcription Primary T helper 17 cells PMA-I stimulated --
44 chr9:5950000-5958200 Weak transcription GM12878-XiMat blood
45 chr9:5950000-5958400 Weak transcription Primary T cells effector/memory enriched fromperipheralblood blood
46 chr9:5950200-5958400 Weak transcription Primary T cells from cord blood blood
47 chr9:5950200-5965200 Weak transcription H9 Derived Neuron Cultured Cells ES cell derived
48 chr9:5950200-5968600 Weak transcription Dnd41 blood
49 chr9:5950200-5973600 Weak transcription Primary T helper naive cells fromperipheralblood blood
50 chr9:5950400-5967600 Weak transcription Primary T helper memory cells from peripheral blood 1 blood

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Last update: Aug 31, 2015