Variant report

Variant	rs3934675
Chromosome Location	chr4:47013109-47013110
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs13111327	0.95[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs13139021	0.86[EUR][1000 genomes]
rs13139768	0.90[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs35982616	0.91[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs3934674	0.81[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs3934675	GABRA4	cis	cerebellum	SCAN
rs3934675	FRYL	cis	cerebellum	SCAN

Chromatin state (count:36 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:46997600-47013200	Weak transcription	Right Ventricle	heart
2	chr4:47011600-47013400	Enhancers	Stomach Mucosa	stomach
3	chr4:47012200-47013600	Enhancers	Fetal Heart	heart
4	chr4:47012400-47013600	Enhancers	GM12878-XiMat	blood
5	chr4:47012600-47013200	Enhancers	Brain Hippocampus Middle	brain
6	chr4:47012600-47013200	Active TSS	Stomach Smooth Muscle	stomach
7	chr4:47012600-47013200	Active TSS	Monocytes-CD14+_RO01746	blood
8	chr4:47012600-47013400	Flanking Active TSS	Primary T helper memory cells from peripheral blood 1	blood
9	chr4:47012600-47013400	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
10	chr4:47012600-47013400	Active TSS	Brain Anterior Caudate	brain
11	chr4:47012600-47013600	Enhancers	Primary T cells fromperipheralblood	blood
12	chr4:47012600-47013600	Flanking Active TSS	Primary T helper naive cells from peripheral blood	blood
13	chr4:47012600-47013600	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
14	chr4:47012600-47013600	Flanking Active TSS	Primary T killer memory cells from peripheral blood	blood
15	chr4:47012600-47013600	Flanking Active TSS	Dnd41	blood
16	chr4:47012800-47013200	Active TSS	Primary T helper naive cells fromperipheralblood	blood
17	chr4:47012800-47013200	Active TSS	Liver	Liver
18	chr4:47012800-47013200	Active TSS	Duodenum Smooth Muscle	Duodenum
19	chr4:47012800-47013200	Active TSS	Rectal Mucosa Donor 29	rectum
20	chr4:47012800-47013400	Enhancers	Primary hematopoietic stem cells short term culture	blood
21	chr4:47012800-47013400	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
22	chr4:47012800-47013400	Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
23	chr4:47012800-47013400	Active TSS	Brain Inferior Temporal Lobe	brain
24	chr4:47012800-47013600	Flanking Active TSS	Primary T helper memory cells from peripheral blood 2	blood
25	chr4:47012800-47013600	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
26	chr4:47012800-47013600	Active TSS	Osteobl	bone
27	chr4:47013000-47013200	Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
28	chr4:47013000-47013200	Active TSS	Duodenum Mucosa	Duodenum
29	chr4:47013000-47013400	Active TSS	Primary T regulatory cells fromperipheralblood	blood
30	chr4:47013000-47013400	Flanking Active TSS	Brain Substantia Nigra	brain
31	chr4:47013000-47013400	Active TSS	Colon Smooth Muscle	Colon
32	chr4:47013000-47013400	Enhancers	Hela-S3	cervix
33	chr4:47013000-47013600	Flanking Active TSS	Primary T helper 17 cells PMA-I stimulated	--
34	chr4:47013000-47013600	Flanking Active TSS	Primary T killer naive cells fromperipheralblood	blood
35	chr4:47013000-47013600	Enhancers	Right Atrium	heart
36	chr4:47013000-47013600	Flanking Active TSS	HepG2	liver

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