Variant report

Variant	rs3936752
Chromosome Location	chr7:150372452-150372453
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 37 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10241142	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10245231	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10250584	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10260218	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10265803	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10807981	0.88[EUR][1000 genomes]
rs10807982	0.88[EUR][1000 genomes]
rs10952280	0.80[EUR][1000 genomes]
rs1234353	0.90[EUR][1000 genomes]
rs1234354	0.91[CEU][hapmap];0.85[CHB][hapmap];0.90[EUR][1000 genomes]
rs1234358	1.00[CEU][hapmap];0.90[CHB][hapmap];0.85[JPT][hapmap];0.96[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1234359	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1234362	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1234363	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1234364	0.84[AFR][1000 genomes];0.90[AMR][1000 genomes];0.80[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12534014	0.86[EUR][1000 genomes]
rs12703092	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs17173566	0.91[CEU][hapmap];0.90[CHB][hapmap];0.84[JPT][hapmap];0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2049247	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2049249	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2140144	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2373844	0.85[AMR][1000 genomes];0.99[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4725925	0.85[EUR][1000 genomes]
rs6946579	0.86[CEU][hapmap];0.86[EUR][1000 genomes]
rs6962505	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6965369	0.96[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6976084	0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1034409	chr7:149844639-150447071	Flanking Active TSS Active TSS Genic enhancers Enhancers ZNF genes & repeats Bivalent Enhancer Weak transcription Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	75 gene(s)	inside rSNPs	diseases
2	nsv608990	chr7:149961274-150707488	Active TSS Flanking Active TSS Enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Weak transcription ZNF genes & repeats Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	90 gene(s)	inside rSNPs	diseases
3	nsv1017368	chr7:150016952-150655773	Bivalent Enhancer ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Strong transcription Active TSS Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	80 gene(s)	inside rSNPs	diseases
4	nsv539195	chr7:150016952-150655773	Bivalent Enhancer Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	80 gene(s)	inside rSNPs	diseases
5	esv2758617	chr7:150251949-150463804	Transcr. at gene 5' and 3' Genic enhancers Flanking Active TSS Active TSS Weak transcription Bivalent Enhancer Enhancers ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
6	esv2759573	chr7:150251949-150463804	Weak transcription Active TSS Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
7	esv3388935	chr7:150301204-150374532	Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
8	nsv1030109	chr7:150312916-150701010	Enhancers Active TSS Weak transcription Bivalent Enhancer ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
9	nsv967475	chr7:150323577-150610034	Enhancers Bivalent Enhancer Weak transcription Genic enhancers Transcr. at gene 5' and 3' Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
10	nsv831187	chr7:150325913-150503500	Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Genic enhancers Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs3936752	GIMAP4	Cis_1M	lymphoblastoid	RTeQTL
rs3936752	GIMAP8	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:150366000-150372800	Weak transcription	Thymus	Thymus
2	chr7:150370000-150373400	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
3	chr7:150370000-150377000	Enhancers	Primary T helper cells fromperipheralblood	blood
4	chr7:150371600-150372800	Enhancers	Primary T killer memory cells from peripheral blood	blood
5	chr7:150371800-150372600	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
6	chr7:150371800-150372800	Enhancers	Primary T helper naive cells fromperipheralblood	blood
7	chr7:150371800-150377200	Enhancers	Primary T killer naive cells fromperipheralblood	blood
8	chr7:150372000-150372800	Enhancers	HUVEC	blood vessel
9	chr7:150372000-150373000	Enhancers	Primary T regulatory cells fromperipheralblood	blood
10	chr7:150372000-150373400	Enhancers	Primary T cells fromperipheralblood	blood
11	chr7:150372000-150373400	Enhancers	Primary T helper cells PMA-I stimulated	--
12	chr7:150372000-150373400	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
13	chr7:150372000-150373600	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
14	chr7:150372000-150374000	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
15	chr7:150372000-150375200	Enhancers	Primary monocytes fromperipheralblood	blood
16	chr7:150372000-150375600	Enhancers	Primary hematopoietic stem cells	blood
17	chr7:150372000-150376200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
18	chr7:150372000-150376400	Enhancers	Fetal Thymus	thymus
19	chr7:150372200-150373000	Enhancers	Brain Substantia Nigra	brain
20	chr7:150372200-150373200	Enhancers	Adipose Nuclei	Adipose
21	chr7:150372200-150374000	Flanking Active TSS	Primary T cells from cord blood	blood
22	chr7:150372200-150374200	Enhancers	GM12878-XiMat	blood
23	chr7:150372400-150372800	Enhancers	Primary T helper naive cells from peripheral blood	blood
24	chr7:150372400-150372800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
25	chr7:150372400-150372800	Enhancers	Dnd41	blood
26	chr7:150372400-150374600	Flanking Active TSS	Monocytes-CD14+_RO01746	blood

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