Variant report

Variant	rs3937520
Chromosome Location	chr18:24718085-24718086
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr18:24712355..24714811-chr18:24718073..24719662,2	MCF-7	breast:

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs1896191	1.00[AMR][1000 genomes]
rs8087815	1.00[YRI][hapmap];0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1067103	chr18:24524011-24760469	Weak transcription Enhancers Active TSS Bivalent Enhancer Flanking Active TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv543668	chr18:24524011-24760469	Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv909473	chr18:24655235-24792075	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS Bivalent/Poised TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv909474	chr18:24683823-24832023	Enhancers Flanking Active TSS Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	nsv909475	chr18:24687324-24776226	Bivalent Enhancer Active TSS Enhancers Bivalent/Poised TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
6	nsv530515	chr18:24704459-24883897	Enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Bivalent/Poised TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:24711800-24718200	Weak transcription	Spleen	Spleen
2	chr18:24715600-24718400	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr18:24716400-24718400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
4	chr18:24716400-24718600	Weak transcription	H1 Cell Line	embryonic stem cell
5	chr18:24716400-24727400	Weak transcription	HUES6 Cell Line	embryonic stem cell
6	chr18:24716600-24718200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
7	chr18:24716600-24721000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
8	chr18:24716600-24722600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
9	chr18:24716600-24722600	Weak transcription	HUES64 Cell Line	embryonic stem cell
10	chr18:24716600-24723600	Weak transcription	Gastric	stomach
11	chr18:24716600-24724000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
12	chr18:24716600-24730200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
13	chr18:24717400-24718200	Enhancers	Pancreas	Pancrea
14	chr18:24717400-24718400	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr18:24717600-24718200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
16	chr18:24717600-24718800	Enhancers	HepG2	liver
17	chr18:24717600-24719000	Enhancers	Pancreatic Islets	Pancreatic Islet
18	chr18:24717800-24719000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
19	chr18:24718000-24718400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
20	chr18:24718000-24718400	Enhancers	H9 Cell Line	embryonic stem cell
21	chr18:24718000-24718800	Enhancers	iPS-18 Cell Line	embryonic stem cell
22	chr18:24718000-24718800	Enhancers	Cortex derived primary cultured neurospheres	brain
23	chr18:24718000-24718800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain

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