Variant report

Variant	rs3937684
Chromosome Location	chr15:40866811-40866812
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:40866258..40868658-chr15:40873477..40876647,3	MCF-7	breast:

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs2898999	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv34145	chr15:40549617-40889824	Weak transcription Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	66 gene(s)	inside rSNPs	diseases
2	nsv832984	chr15:40794391-40998535	Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription Enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	46 gene(s)	inside rSNPs	diseases
3	esv2758378	chr15:40832545-40995111	Active TSS Flanking Active TSS Strong transcription Enhancers Genic enhancers Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	44 gene(s)	inside rSNPs	diseases
4	esv2760026	chr15:40832545-40995111	Weak transcription Flanking Active TSS Strong transcription Active TSS Enhancers Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	44 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:123 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:40862800-40867000	Strong transcription	Fetal Muscle Trunk	muscle
2	chr15:40862800-40875200	Weak transcription	Primary neutrophils fromperipheralblood	blood
3	chr15:40863000-40868200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
4	chr15:40863000-40870200	Weak transcription	Primary hematopoietic stem cells	blood
5	chr15:40863000-40875000	Weak transcription	Pancreatic Islets	Pancreatic Islet
6	chr15:40863000-40875000	Weak transcription	Rectal Smooth Muscle	rectum
7	chr15:40863200-40867200	Strong transcription	Fetal Muscle Leg	muscle
8	chr15:40863200-40868600	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
9	chr15:40863200-40868800	Weak transcription	Fetal Heart	heart
10	chr15:40863200-40869000	Weak transcription	Fetal Brain Male	brain
11	chr15:40863600-40867000	Strong transcription	H1 Cell Line	embryonic stem cell
12	chr15:40863600-40867000	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
13	chr15:40863600-40867000	Strong transcription	Osteobl	bone
14	chr15:40863600-40867200	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
15	chr15:40863600-40867200	Strong transcription	Breast Myoepithelial Primary Cells	Breast
16	chr15:40863600-40867200	Strong transcription	Primary B cells from cord blood	blood
17	chr15:40863600-40867200	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
18	chr15:40863600-40867200	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
19	chr15:40863600-40867200	Strong transcription	Brain Anterior Caudate	brain
20	chr15:40863600-40867400	Strong transcription	HUES6 Cell Line	embryonic stem cell
21	chr15:40863600-40867400	Strong transcription	iPS-20b Cell Line	embryonic stem cell
22	chr15:40863600-40867400	Strong transcription	Primary hematopoietic stem cells short term culture	blood
23	chr15:40863600-40867400	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
24	chr15:40863600-40867400	Strong transcription	Liver	Liver
25	chr15:40863600-40867400	Strong transcription	NHDF-Ad	bronchial
26	chr15:40863600-40867400	Strong transcription	NHEK	skin
27	chr15:40863600-40867600	Strong transcription	iPS-18 Cell Line	embryonic stem cell
28	chr15:40863600-40867600	Strong transcription	Adipose Nuclei	Adipose
29	chr15:40863600-40867600	Strong transcription	Ovary	ovary
30	chr15:40863600-40867800	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
31	chr15:40863600-40867800	Strong transcription	Brain Hippocampus Middle	brain
32	chr15:40863600-40868000	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
33	chr15:40863600-40868000	Strong transcription	HUES64 Cell Line	embryonic stem cell
34	chr15:40863800-40867200	Strong transcription	Primary B cells from peripheral blood	blood
35	chr15:40863800-40867200	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
36	chr15:40863800-40867200	Strong transcription	Brain Dorsolateral Prefrontal Cortex	brain
37	chr15:40863800-40867200	Strong transcription	Fetal Thymus	thymus
38	chr15:40863800-40867400	Strong transcription	HUES48 Cell Line	embryonic stem cell
39	chr15:40863800-40867400	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
40	chr15:40863800-40867400	Strong transcription	Primary T cells from cord blood	blood
41	chr15:40863800-40867400	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
42	chr15:40863800-40867400	Strong transcription	Skeletal Muscle Male	skeletal muscle
43	chr15:40863800-40867400	Strong transcription	Monocytes-CD14+_RO01746	blood
44	chr15:40863800-40867600	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
45	chr15:40863800-40867600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
46	chr15:40863800-40867600	Strong transcription	Rectal Mucosa Donor 29	rectum
47	chr15:40863800-40867600	Strong transcription	NHLF	lung
48	chr15:40863800-40867800	Strong transcription	Duodenum Mucosa	Duodenum
49	chr15:40863800-40868000	Strong transcription	Primary T helper cells fromperipheralblood	blood
50	chr15:40863800-40868000	Strong transcription	Duodenum Smooth Muscle	Duodenum

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links