Variant report

Variant	rs3942955
Chromosome Location	chr1:85712287-85712288
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr1:85709353..85713723-chr1:85723049..85726532,6	K562	blood:
2	chr1:85667613..85669609-chr1:85711130..85713411,2	MCF-7	breast:
3	chr1:85708208..85712302-chr1:85713167..85718221,7	K562	blood:

Variant related genes	Relation type
ENSG00000162642	Chromatin interaction

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs10158486	0.83[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1006994	chr1:85454304-86327679	Active TSS Enhancers Weak transcription Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	72 gene(s)	inside rSNPs	diseases
2	esv34165	chr1:85542040-85846249	Flanking Active TSS Active TSS Weak transcription Enhancers Transcr. at gene 5' and 3' Strong transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
3	nsv830459	chr1:85589585-85786311	Weak transcription Enhancers Genic enhancers Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	27 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:72 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:85706000-85716000	Weak transcription	H1 Cell Line	embryonic stem cell
2	chr1:85706600-85716000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
3	chr1:85706600-85716000	Weak transcription	Fetal Intestine Large	intestine
4	chr1:85706600-85716400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
5	chr1:85706800-85716000	Weak transcription	Primary T cells from cord blood	blood
6	chr1:85706800-85718400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
7	chr1:85707000-85715600	Weak transcription	Primary hematopoietic stem cells	blood
8	chr1:85707000-85716400	Weak transcription	Primary T helper cells fromperipheralblood	blood
9	chr1:85707000-85719400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
10	chr1:85707000-85719600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
11	chr1:85707000-85721600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
12	chr1:85707000-85722800	Weak transcription	HepG2	liver
13	chr1:85707000-85723000	Weak transcription	Stomach Mucosa	stomach
14	chr1:85707200-85715800	Weak transcription	Primary T helper cells PMA-I stimulated	--
15	chr1:85707200-85716000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
16	chr1:85707200-85716200	Weak transcription	Primary T cells fromperipheralblood	blood
17	chr1:85707800-85724400	Weak transcription	Lung	lung
18	chr1:85708600-85712400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
19	chr1:85709800-85724200	Weak transcription	Colonic Mucosa	Colon
20	chr1:85710400-85714400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
21	chr1:85710400-85714400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
22	chr1:85710400-85721400	Weak transcription	Brain Cingulate Gyrus	brain
23	chr1:85710400-85724000	Weak transcription	Ovary	ovary
24	chr1:85710400-85724000	Weak transcription	Right Ventricle	heart
25	chr1:85710600-85716200	Weak transcription	HUES64 Cell Line	embryonic stem cell
26	chr1:85710600-85716200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
27	chr1:85710600-85716600	Weak transcription	Duodenum Smooth Muscle	Duodenum
28	chr1:85710600-85717000	Weak transcription	HUES48 Cell Line	embryonic stem cell
29	chr1:85710600-85719800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
30	chr1:85710600-85722600	Weak transcription	Skeletal Muscle Female	skeletal muscle
31	chr1:85710600-85723800	Weak transcription	Skeletal Muscle Male	skeletal muscle
32	chr1:85710800-85714600	Weak transcription	Fetal Thymus	thymus
33	chr1:85710800-85715800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
34	chr1:85710800-85716800	Weak transcription	Adipose Nuclei	Adipose
35	chr1:85710800-85717000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
36	chr1:85710800-85717200	Weak transcription	HUVEC	blood vessel
37	chr1:85710800-85717400	Weak transcription	Rectal Mucosa Donor 31	rectum
38	chr1:85710800-85717400	Weak transcription	NH-A	brain
39	chr1:85710800-85718200	Weak transcription	Psoas Muscle	Psoas
40	chr1:85710800-85724000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
41	chr1:85710800-85724200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
42	chr1:85710800-85724400	Weak transcription	Placenta Amnion	Placenta Amnion
43	chr1:85710800-85724600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
44	chr1:85711200-85712400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
45	chr1:85711200-85715800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
46	chr1:85711400-85715600	Weak transcription	Fetal Muscle Leg	muscle
47	chr1:85711400-85717000	Weak transcription	Fetal Lung	lung
48	chr1:85711400-85717000	Weak transcription	Left Ventricle	heart
49	chr1:85711400-85718200	Weak transcription	Hela-S3	cervix
50	chr1:85711400-85719800	Weak transcription	Rectal Smooth Muscle	rectum

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